Variant report

Variant	rs11780909
Chromosome Location	chr8:63625170-63625171
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10093544	0.92[ASN][1000 genomes]
rs10107976	0.92[ASN][1000 genomes]
rs10957238	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11985179	0.92[ASN][1000 genomes]
rs12386973	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708012	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1351348	0.82[EUR][1000 genomes]
rs1351349	0.84[EUR][1000 genomes]
rs1351352	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1471509	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1471516	0.86[EUR][1000 genomes]
rs1480118	0.96[ASN][1000 genomes]
rs1480124	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1480125	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1480127	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1480196	0.92[ASN][1000 genomes]
rs1531651	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1600537	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1600539	0.93[ASN][1000 genomes]
rs1600540	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16929386	0.91[EUR][1000 genomes]
rs16929397	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1904572	0.91[ASN][1000 genomes]
rs1904574	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2054523	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2127560	0.96[ASN][1000 genomes]
rs2352401	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28663458	0.82[EUR][1000 genomes]
rs4621803	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58817091	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58821999	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59260185	0.83[EUR][1000 genomes]
rs6472047	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6996317	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6996526	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7001779	0.92[ASN][1000 genomes]
rs7003752	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7005463	0.96[ASN][1000 genomes]
rs7008248	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7008492	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7009434	0.96[ASN][1000 genomes]
rs7012264	0.92[ASN][1000 genomes]
rs7821374	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7828204	0.92[ASN][1000 genomes]
rs7837973	0.93[ASN][1000 genomes]
rs931131	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9650208	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs978396	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831340	chr8:63515126-63702660	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv890960	chr8:63516962-63629549	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63624600-63625400	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr8:63624600-63625600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr8:63624600-63625800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr8:63624600-63625800	Enhancers	Stomach Mucosa	stomach
5	chr8:63625000-63625400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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