Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10958374	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10958387	0.87[EUR][1000 genomes]
rs11774639	0.86[EUR][1000 genomes]
rs11776780	0.83[EUR][1000 genomes]
rs11778944	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11778957	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11783135	0.99[EUR][1000 genomes]
rs11785567	0.83[EUR][1000 genomes]
rs11787275	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12155632	0.87[EUR][1000 genomes]
rs12545078	0.98[EUR][1000 genomes]
rs12549792	0.97[EUR][1000 genomes]
rs13263182	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13266530	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13267322	0.98[EUR][1000 genomes]
rs13268090	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13275975	0.99[EUR][1000 genomes]
rs1551912	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35341975	0.96[EUR][1000 genomes]
rs7464047	0.88[EUR][1000 genomes]
rs7815156	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1813750	chr8:54471135-54528984	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2758159	chr8:54474589-54737473	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759616	chr8:54474589-54737473	Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54503400-54510600	Weak transcription	Aorta	Aorta
2	chr8:54503600-54505400	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr8:54504000-54505200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:54504200-54505200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:54504400-54506000	Enhancers	Fetal Heart	heart
6	chr8:54505000-54505200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr8:54505000-54505400	Enhancers	Psoas Muscle	Psoas
8	chr8:54505000-54505400	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr8:54505000-54505800	Enhancers	GM12878-XiMat	blood

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