Variant report

Variant	rs11783281
Chromosome Location	chr8:10139470-10139471
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11249985	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11249990	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11774051	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11777018	0.84[EUR][1000 genomes]
rs11778030	0.83[EUR][1000 genomes]
rs11778901	0.84[EUR][1000 genomes]
rs11781529	0.82[EUR][1000 genomes]
rs11782293	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11783091	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11785954	0.84[EUR][1000 genomes]
rs13257313	0.89[AMR][1000 genomes]
rs13258691	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13264133	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13269741	0.89[AMR][1000 genomes]
rs13272537	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17695316	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2004677	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2004679	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34514972	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34917779	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35287467	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35524676	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4288377	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4570161	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4840478	0.91[AMR][1000 genomes]
rs4840479	0.84[EUR][1000 genomes]
rs4841308	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4841315	0.91[AMR][1000 genomes]
rs4841325	0.83[EUR][1000 genomes]
rs4841326	0.84[EUR][1000 genomes]
rs55965226	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56064712	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6601436	0.89[AMR][1000 genomes]
rs6601438	0.89[AMR][1000 genomes]
rs71516564	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs723609	0.89[AMR][1000 genomes]
rs7817142	0.85[AMR][1000 genomes]
rs7838059	0.89[AMR][1000 genomes]
rs9650648	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9650649	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831231	chr8:10001214-10189094	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1026335	chr8:10037279-10139782	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv1016347	chr8:10091475-10223667	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1028650	chr8:10101815-10178537	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10130400-10144200	Weak transcription	Liver	Liver
2	chr8:10134200-10147600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr8:10136600-10142800	Weak transcription	Pancreas	Pancrea
4	chr8:10137400-10140000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr8:10137600-10141800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr8:10138200-10140200	Enhancers	Brain Germinal Matrix	brain
7	chr8:10138200-10141800	Weak transcription	HMEC	breast
8	chr8:10138400-10142000	Weak transcription	NHEK	skin
9	chr8:10138800-10140200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr8:10139000-10139600	Enhancers	Fetal Brain Male	brain
11	chr8:10139200-10139800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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