Variant report

Variant	rs11784061
Chromosome Location	chr8:10750204-10750205
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10736875..10738986-chr8:10748805..10751252,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11250084	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11776011	1.00[ASN][1000 genomes]
rs11784331	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11986699	1.00[CEU][hapmap]
rs11993591	0.91[CEU][hapmap]
rs13248287	0.90[CEU][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13270870	0.87[ASN][1000 genomes]
rs13279307	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13279922	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1430866	0.90[CEU][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.92[TSI][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1529598	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs34716741	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35888807	0.87[ASN][1000 genomes]
rs4240671	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4240672	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4326350	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4520127	0.81[CEU][hapmap]
rs4840525	0.87[ASN][1000 genomes]
rs4841461	0.83[CEU][hapmap]
rs4841462	0.81[CEU][hapmap];0.80[TSI][hapmap]
rs57145255	1.00[ASN][1000 genomes]
rs6985109	1.00[JPT][hapmap]
rs6985767	0.87[ASN][1000 genomes]
rs6988281	0.91[CEU][hapmap]
rs6992103	0.89[CEU][hapmap]
rs6997839	0.87[ASN][1000 genomes]
rs6997997	0.87[ASN][1000 genomes]
rs71516598	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7813037	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821826	1.00[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1026802	chr8:10576444-10754489	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv539469	chr8:10576444-10754489	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1017836	chr8:10591801-10803617	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1034988	chr8:10591801-10804243	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
6	nsv831232	chr8:10606053-10774948	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
7	nsv508497	chr8:10680621-10750255	Genic enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10720800-10756200	Weak transcription	Pancreas	Pancrea
2	chr8:10748000-10752200	Enhancers	Placenta	Placenta
3	chr8:10748800-10753000	Weak transcription	Right Atrium	heart
4	chr8:10749400-10755800	Weak transcription	Spleen	Spleen
5	chr8:10750000-10751400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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