Variant report

Variant	rs11788735
Chromosome Location	chr9:16488804-16488805
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10118670	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10123011	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10810567	0.92[ASN][1000 genomes]
rs10810570	0.95[CEU][hapmap];0.84[CHB][hapmap];0.98[EUR][1000 genomes]
rs10962446	0.87[ASN][1000 genomes]
rs11793518	0.87[ASN][1000 genomes]
rs2274557	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6475057	0.82[CHB][hapmap];0.88[EUR][1000 genomes]
rs755180	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs997693	0.84[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv892646	chr9:16476144-16514375	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS	lncRNA	n/a	inside rSNPs	diseases
6	nsv892647	chr9:16476144-16521534	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv466265	chr9:16484731-16516941	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
8	nsv613670	chr9:16484731-16516941	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16457800-16493400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:16459600-16499800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr9:16459600-16500000	Weak transcription	NHLF	lung
4	chr9:16471000-16504600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:16483200-16513600	Weak transcription	Psoas Muscle	Psoas
6	chr9:16483600-16491400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:16483800-16490400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr9:16484000-16490000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr9:16484400-16489400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr9:16485000-16499800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr9:16485000-16500000	Weak transcription	HSMM	muscle
12	chr9:16485000-16504800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr9:16485200-16491800	Weak transcription	Fetal Lung	lung
14	chr9:16485400-16499800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr9:16485400-16505000	Weak transcription	HSMMtube	muscle
16	chr9:16485800-16489400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr9:16485800-16490800	Weak transcription	Ovary	ovary
18	chr9:16485800-16505800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr9:16486200-16489000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr9:16486200-16500000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr9:16486400-16489600	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr9:16486600-16489800	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr9:16486600-16500000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr9:16487400-16500000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr9:16487600-16489400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr9:16488000-16489000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr9:16488200-16493400	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr9:16488200-16504600	Weak transcription	Fetal Stomach	stomach
29	chr9:16488200-16505200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr9:16488600-16489000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr9:16488800-16493400	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr9:16488800-16493600	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr9:16488800-16505000	Weak transcription	Rectal Smooth Muscle	rectum

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