Variant report

Variant	rs11788769
Chromosome Location	chr9:71124372-71124373
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10780986	0.88[ASN][1000 genomes]
rs10869001	0.83[ASN][1000 genomes]
rs11142697	0.87[ASN][1000 genomes]
rs12375820	0.93[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2131355	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7034863	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71117000-71129600	Weak transcription	NHLF	lung
2	chr9:71117600-71142800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr9:71120200-71124600	Enhancers	Rectal Smooth Muscle	rectum
4	chr9:71120800-71130200	Weak transcription	Aorta	Aorta
5	chr9:71121000-71124400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr9:71121000-71129000	Weak transcription	Psoas Muscle	Psoas
7	chr9:71121000-71129600	Weak transcription	Fetal Intestine Large	intestine
8	chr9:71121200-71128400	Weak transcription	Right Ventricle	heart
9	chr9:71121200-71129800	Weak transcription	Fetal Intestine Small	intestine
10	chr9:71121800-71124800	Enhancers	Colon Smooth Muscle	Colon
11	chr9:71122200-71133200	Weak transcription	Ovary	ovary
12	chr9:71122400-71132000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr9:71122600-71124600	Enhancers	K562	blood
14	chr9:71122600-71132400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr9:71122800-71124400	Enhancers	Fetal Lung	lung
16	chr9:71123000-71124400	Enhancers	HepG2	liver
17	chr9:71123000-71128200	Weak transcription	Fetal Heart	heart
18	chr9:71123200-71128400	Weak transcription	Left Ventricle	heart
19	chr9:71123200-71129000	Weak transcription	Placenta	Placenta
20	chr9:71123200-71129600	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr9:71123200-71130000	Weak transcription	HSMMtube	muscle
22	chr9:71123400-71124800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:71123400-71125000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr9:71123600-71124400	Genic enhancers	Skeletal Muscle Male	skeletal muscle
25	chr9:71123600-71125000	Genic enhancers	Stomach Smooth Muscle	stomach
26	chr9:71123800-71130200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr9:71124000-71124400	Weak transcription	Fetal Kidney	kidney
28	chr9:71124000-71124800	Strong transcription	Fetal Muscle Leg	muscle
29	chr9:71124000-71130600	Weak transcription	Stomach Mucosa	stomach
30	chr9:71124200-71124800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr9:71124200-71124800	Strong transcription	Fetal Muscle Trunk	muscle
32	chr9:71124200-71125000	Strong transcription	Fetal Stomach	stomach
33	chr9:71124200-71129000	Weak transcription	Right Atrium	heart
34	chr9:71124200-71129600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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