Variant report

Variant	rs11795579
Chromosome Location	chrX:78214061-78214062
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1023465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5912736	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs5959237	0.88[JPT][hapmap]
rs6618868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394349	chrX:77977388-78779139	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:78205400-78216000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chrX:78205600-78216200	Weak transcription	Primary hematopoietic stem cells	blood
3	chrX:78206400-78217200	Genic enhancers	Primary B cells from peripheral blood	blood
4	chrX:78206800-78215600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chrX:78209200-78215600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chrX:78209800-78214600	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chrX:78210000-78215000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chrX:78210000-78215400	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chrX:78210600-78215200	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chrX:78210800-78214800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chrX:78210800-78215000	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chrX:78211000-78215000	Enhancers	Primary T cells from cord blood	blood
13	chrX:78212000-78215600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chrX:78212400-78214200	Flanking Active TSS	GM12878-XiMat	blood
15	chrX:78212800-78216200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chrX:78213000-78215800	Enhancers	Dnd41	blood
17	chrX:78213200-78219800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chrX:78213400-78214200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chrX:78213600-78214200	Enhancers	Fetal Thymus	thymus
20	chrX:78213800-78214200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chrX:78213800-78215600	Genic enhancers	Primary B cells from cord blood	blood
22	chrX:78214000-78214600	Weak transcription	Primary T cells fromperipheralblood	blood

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