Variant report

Variant	rs11799798
Chromosome Location	chr1:94241430-94241431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr1:94240484-94241453	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT3	chr1:94240455-94241697	MCF10A-Er-Src	breast:	n/a	chr1:94241634-94241645 chr1:94240570-94240593 chr1:94241531-94241539
3	STAT3	chr1:94241392-94241992	MCF10A-Er-Src	breast:	n/a	chr1:94241634-94241645 chr1:94241531-94241539
4	FOS	chr1:94240802-94241438	MCF10A-Er-Src	breast:	n/a	n/a
5	STAT3	chr1:94241392-94241997	MCF10A-Er-Src	breast:	n/a	chr1:94241634-94241645 chr1:94241531-94241539
6	STAT3	chr1:94241422-94242679	MCF10A-Er-Src	breast:	n/a	chr1:94241634-94241645 chr1:94241531-94241539
7	STAT3	chr1:94241411-94241656	MCF10A-Er-Src	breast:	n/a	chr1:94241634-94241645 chr1:94241531-94241539
8	POLR2A	chr1:94236714-94241999	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000230439	TF binding region

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11799613	1.00[EUR][1000 genomes]
rs11800378	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11801536	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11804187	1.00[AMR][1000 genomes]
rs11805483	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11806874	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11807845	1.00[AMR][1000 genomes]
rs11810655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11811077	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11811811	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11812065	0.82[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17878956	1.00[AMR][1000 genomes]
rs17881957	1.00[AMR][1000 genomes]
rs17884925	1.00[AMR][1000 genomes]
rs2143995	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34212520	1.00[AMR][1000 genomes]
rs57824006	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59857996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59984689	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60114825	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60465681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6692003	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6698242	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94220000-94254200	Weak transcription	Aorta	Aorta
2	chr1:94235600-94241600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:94235600-94245200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:94235600-94245200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:94235800-94241600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr1:94235800-94245200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:94235800-94245200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr1:94236000-94244600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:94236000-94245400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr1:94236000-94245400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:94236200-94247400	Weak transcription	Fetal Intestine Small	intestine
12	chr1:94239400-94242800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr1:94239400-94245200	Weak transcription	Psoas Muscle	Psoas
14	chr1:94239600-94242200	Weak transcription	HepG2	liver
15	chr1:94240600-94241800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr1:94240600-94241800	Enhancers	Brain Hippocampus Middle	brain
17	chr1:94240600-94243000	Enhancers	A549	lung
18	chr1:94240800-94241600	Enhancers	Fetal Brain Male	brain
19	chr1:94240800-94244600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr1:94240800-94245000	Weak transcription	Osteobl	bone
21	chr1:94241000-94241600	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr1:94241000-94242400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:94241000-94242800	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr1:94241000-94243000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr1:94241000-94243000	Enhancers	NHEK	skin
26	chr1:94241000-94243600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr1:94241000-94243600	Weak transcription	Placenta	Placenta
28	chr1:94241000-94244600	Weak transcription	NH-A	brain
29	chr1:94241000-94244800	Weak transcription	HSMM	muscle
30	chr1:94241000-94245200	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr1:94241000-94245400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr1:94241000-94245400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr1:94241000-94247400	Enhancers	HMEC	breast
34	chr1:94241000-94249000	Enhancers	Hela-S3	cervix
35	chr1:94241200-94245000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr1:94241200-94245000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr1:94241200-94248400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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