Variant report

Variant	rs11799859
Chromosome Location	chr1:93884926-93884927
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10157785	1.00[EUR][1000 genomes]
rs11802421	1.00[EUR][1000 genomes]
rs11805046	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11807404	1.00[EUR][1000 genomes]
rs11808266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12239921	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17109954	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17110000	0.94[YRI][hapmap]
rs17110016	0.94[YRI][hapmap];1.00[EUR][1000 genomes]
rs17110023	0.93[YRI][hapmap]
rs17131715	1.00[EUR][1000 genomes]
rs17131717	1.00[EUR][1000 genomes]
rs35555794	1.00[EUR][1000 genomes]
rs55940503	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55959166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57353954	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58351576	1.00[EUR][1000 genomes]
rs58505360	1.00[EUR][1000 genomes]
rs59045869	1.00[EUR][1000 genomes]
rs60032869	1.00[EUR][1000 genomes]
rs60046384	1.00[EUR][1000 genomes]
rs60517691	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61215181	1.00[EUR][1000 genomes]
rs61671588	1.00[EUR][1000 genomes]
rs6541360	1.00[EUR][1000 genomes]
rs6541378	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6664053	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6678465	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6682265	1.00[EUR][1000 genomes]
rs6687167	0.93[YRI][hapmap];1.00[EUR][1000 genomes]
rs6703963	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72957300	1.00[EUR][1000 genomes]
rs72961310	1.00[EUR][1000 genomes]
rs74101453	1.00[EUR][1000 genomes]
rs74101464	1.00[EUR][1000 genomes]
rs74101603	1.00[EUR][1000 genomes]
rs74104019	0.83[AMR][1000 genomes]
rs74104033	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7518171	1.00[EUR][1000 genomes]
rs7525388	1.00[EUR][1000 genomes]
rs7530923	1.00[EUR][1000 genomes]
rs7545358	1.00[EUR][1000 genomes]
rs754899	1.00[EUR][1000 genomes]
rs9662414	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871640	chr1:93807122-93953469	Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv3375834	chr1:93872980-93904647	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93881400-93891800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:93884200-93885200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:93884800-93885400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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