Variant report

Variant	rs11802029
Chromosome Location	chr1:221011700-221011701
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:221011621..221013543-chr1:221423214..221424973,2	K562	blood:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs11118602	1.00[JPT][hapmap]
rs11118603	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs11118604	1.00[JPT][hapmap]
rs11804342	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12021979	1.00[JPT][hapmap]
rs12023067	1.00[JPT][hapmap]
rs12023202	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12023249	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12023303	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12023484	1.00[JPT][hapmap]
rs12026135	1.00[JPT][hapmap]
rs12026813	1.00[JPT][hapmap]
rs12027068	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12028887	1.00[JPT][hapmap]
rs12029901	1.00[JPT][hapmap]
rs12030190	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12030249	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12030434	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12031217	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12031225	1.00[JPT][hapmap]
rs12031479	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12032061	1.00[JPT][hapmap]
rs12032336	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12033644	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12033732	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12033808	1.00[JPT][hapmap]
rs12034995	1.00[JPT][hapmap]
rs12035639	1.00[JPT][hapmap]
rs12038224	0.86[CHB][hapmap]
rs12039043	1.00[JPT][hapmap]
rs12039064	1.00[JPT][hapmap]
rs12039091	1.00[JPT][hapmap]
rs12043238	1.00[JPT][hapmap]
rs12045953	1.00[JPT][hapmap]
rs12048861	1.00[JPT][hapmap]
rs17008680	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs17008808	0.84[ASN][1000 genomes]
rs1874115	1.00[JPT][hapmap]
rs1874116	1.00[JPT][hapmap]
rs1874117	1.00[JPT][hapmap]
rs1874123	1.00[JPT][hapmap]
rs1982895	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2067632	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2067633	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs2270535	1.00[JPT][hapmap]
rs2642446	0.86[CHB][hapmap];0.84[ASN][1000 genomes]
rs3767324	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs419746	1.00[JPT][hapmap]
rs6671579	1.00[JPT][hapmap]
rs6687366	1.00[JPT][hapmap]
rs72472318	0.84[ASN][1000 genomes]
rs72472319	0.84[ASN][1000 genomes]
rs72472320	0.84[ASN][1000 genomes]
rs72472325	0.84[ASN][1000 genomes]
rs72472326	0.84[ASN][1000 genomes]
rs72472331	0.84[ASN][1000 genomes]
rs72472335	0.84[ASN][1000 genomes]
rs72472336	0.84[ASN][1000 genomes]
rs72472347	0.87[ASN][1000 genomes]
rs72472352	0.87[ASN][1000 genomes]
rs72472355	0.92[ASN][1000 genomes]
rs72472356	0.92[ASN][1000 genomes]
rs72472359	1.00[ASN][1000 genomes]
rs72472362	1.00[ASN][1000 genomes]
rs746767	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs953970	1.00[JPT][hapmap]
rs964581	1.00[ASN][1000 genomes]
rs9970393	1.00[JPT][hapmap]
rs9970394	0.88[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221002800-221016200	Weak transcription	Fetal Lung	lung
2	chr1:221003600-221012200	Weak transcription	Fetal Heart	heart
3	chr1:221004400-221014200	Weak transcription	Aorta	Aorta
4	chr1:221004800-221012800	Weak transcription	Left Ventricle	heart
5	chr1:221008000-221015800	Weak transcription	Adipose Nuclei	Adipose
6	chr1:221008200-221015600	Weak transcription	Colon Smooth Muscle	Colon
7	chr1:221011600-221013400	Enhancers	HUVEC	blood vessel

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