Variant report

Variant	rs11802124
Chromosome Location	chr1:57641701-57641702
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs155290	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs155292	1.00[AMR][1000 genomes]
rs17115034	1.00[AMR][1000 genomes]
rs1760208	1.00[AMR][1000 genomes]
rs3850545	1.00[AMR][1000 genomes]
rs498065	1.00[AMR][1000 genomes]
rs55750012	1.00[AMR][1000 genomes]
rs60411523	1.00[AMR][1000 genomes]
rs61163916	1.00[AMR][1000 genomes]
rs6701397	1.00[AMR][1000 genomes]
rs72905258	1.00[AMR][1000 genomes]
rs72905479	1.00[AMR][1000 genomes]
rs72907176	1.00[AMR][1000 genomes]
rs72907186	1.00[AMR][1000 genomes]
rs72917110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72919284	1.00[AMR][1000 genomes]
rs72919287	1.00[AMR][1000 genomes]
rs74074396	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57624000-57644800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:57638600-57644800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr1:57641600-57641800	ZNF genes & repeats	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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