Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10864142	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11120459	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12061587	1.00[JPT][hapmap]
rs12067044	0.83[ASN][1000 genomes]
rs12069528	1.00[JPT][hapmap]
rs12069967	1.00[JPT][hapmap]
rs12079267	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12084891	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12116663	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12121815	1.00[JPT][hapmap]
rs1452633	0.87[CEU][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes]
rs1452635	1.00[EUR][1000 genomes]
rs1947364	1.00[JPT][hapmap]
rs2198325	0.83[ASN][1000 genomes]
rs2363553	1.00[JPT][hapmap]
rs2601649	0.83[EUR][1000 genomes]
rs2802656	1.00[JPT][hapmap]
rs2841617	1.00[EUR][1000 genomes]
rs4433363	1.00[JPT][hapmap]
rs56152266	0.83[ASN][1000 genomes]
rs61819973	0.83[ASN][1000 genomes]
rs61819974	0.83[ASN][1000 genomes]
rs61819975	0.83[ASN][1000 genomes]
rs6662428	0.98[EUR][1000 genomes]
rs6665177	1.00[JPT][hapmap]
rs6679757	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7535436	1.00[JPT][hapmap]
rs7538655	0.86[CEU][hapmap]
rs7551562	1.00[JPT][hapmap]
rs896653	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468105	chr1:215167236-215248417	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549182	chr1:215167236-215248417	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215164200-215174800	Weak transcription	NH-A	brain
2	chr1:215164800-215175000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr1:215167400-215174600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:215168000-215174800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:215171200-215172800	Strong transcription	Osteobl	bone

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