Variant report

Variant	rs11803233
Chromosome Location	chr1:220971803-220971804
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:220963256..220967868-chr1:220967973..220972005,4	MCF-7	breast:
2	chr1:220965572..220968372-chr1:220969216..220971838,2	MCF-7	breast:
3	chr1:220956529..220963831-chr1:220968712..220974793,12	MCF-7	breast:
4	chr1:220969395..220971415-chr1:220971803..220974500,3	K562	blood:

Variant related genes	Relation type
ENSG00000186205	Chromatin interaction

rs_ID	r²[population]
rs11118604	1.00[YRI][hapmap]
rs11808207	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs12026135	0.87[YRI][hapmap]
rs12029901	0.87[YRI][hapmap]
rs1874123	0.87[YRI][hapmap]
rs2270535	0.87[YRI][hapmap]
rs6669217	1.00[YRI][hapmap]
rs6671579	0.87[YRI][hapmap]
rs6672013	0.87[YRI][hapmap]
rs6687366	0.87[YRI][hapmap]

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220961000-220973400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:220961000-220976800	Weak transcription	Ovary	ovary
3	chr1:220961000-220978200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:220961000-220982200	Weak transcription	Brain Substantia Nigra	brain
5	chr1:220961400-220983800	Weak transcription	Esophagus	oesophagus
6	chr1:220961600-220975000	Weak transcription	Brain Angular Gyrus	brain
7	chr1:220961600-220975200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr1:220961600-220983600	Weak transcription	Pancreas	Pancrea
9	chr1:220961800-220972000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr1:220961800-220974200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr1:220961800-220979800	Weak transcription	Right Atrium	heart
12	chr1:220961800-220981400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr1:220961800-220981600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr1:220961800-220983800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr1:220962000-220975000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr1:220964000-220974000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr1:220964800-220972000	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr1:220964800-220978400	Weak transcription	Primary B cells from cord blood	blood
19	chr1:220965000-220972600	Weak transcription	Colonic Mucosa	Colon
20	chr1:220965000-220972600	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr1:220965000-220980000	Weak transcription	Fetal Muscle Leg	muscle
22	chr1:220965200-220979600	Weak transcription	Gastric	stomach
23	chr1:220965200-220985400	Weak transcription	Aorta	Aorta
24	chr1:220965400-220972400	Weak transcription	Brain Anterior Caudate	brain
25	chr1:220965400-220982200	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr1:220965600-220983600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr1:220965800-220983800	Weak transcription	Fetal Lung	lung
28	chr1:220966400-220996000	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr1:220966600-220982400	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr1:220966800-220985200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr1:220967600-220976400	Strong transcription	Adipose Nuclei	Adipose
32	chr1:220967600-220983800	Weak transcription	Psoas Muscle	Psoas
33	chr1:220968200-220977200	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr1:220969600-220972200	Strong transcription	Hela-S3	cervix
35	chr1:220969600-220975600	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr1:220969600-220978800	Strong transcription	HepG2	liver
37	chr1:220969800-220972800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr1:220969800-220974200	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr1:220969800-220976400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr1:220969800-220976600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr1:220970000-220972000	Genic enhancers	Skeletal Muscle Female	skeletal muscle
42	chr1:220970000-220975600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr1:220970000-220975600	Strong transcription	Fetal Intestine Large	intestine
44	chr1:220970000-220976000	Strong transcription	Fetal Stomach	stomach
45	chr1:220970400-220972000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr1:220970400-220972000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr1:220970400-220973000	Weak transcription	Lung	lung
48	chr1:220970400-220981600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr1:220970400-220985800	Weak transcription	Duodenum Mucosa	Duodenum
50	chr1:220970600-220974200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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