Variant report

Variant	rs11803673
Chromosome Location	chr1:71283118-71283119
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10889891	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10889892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11209705	0.98[ASN][1000 genomes]
rs11810467	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12023582	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12026099	0.86[ASN][1000 genomes]
rs12026456	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12034333	0.87[ASN][1000 genomes]
rs12035395	0.90[JPT][hapmap]
rs12040186	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12041247	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs12048245	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs12048393	0.93[CHB][hapmap];0.82[CHD][hapmap]
rs12049445	0.98[ASN][1000 genomes]
rs12049500	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12141116	0.93[CHB][hapmap]
rs1335002	0.87[ASN][1000 genomes]
rs1591386	0.93[CHB][hapmap];0.89[ASN][1000 genomes]
rs17131473	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17131476	0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17131485	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.87[ASN][1000 genomes]
rs17131488	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs1889598	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1932050	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2068652	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.87[ASN][1000 genomes]
rs2152121	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2152122	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2152126	0.93[CHB][hapmap];0.80[JPT][hapmap]
rs2782768	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2782769	0.88[ASN][1000 genomes]
rs2782770	0.89[ASN][1000 genomes]
rs2782786	0.93[CHB][hapmap];0.82[CHD][hapmap]
rs2782787	0.93[CHB][hapmap];0.82[CHD][hapmap]
rs2782788	0.93[CHB][hapmap];0.82[CHD][hapmap]
rs2820513	0.93[CHB][hapmap]
rs2820540	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2820541	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2820542	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34087524	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34745168	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35615554	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36021131	0.87[ASN][1000 genomes]
rs4320734	0.81[ASN][1000 genomes]
rs55884889	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6661453	0.86[ASN][1000 genomes]
rs6684573	0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs74086786	0.99[ASN][1000 genomes]
rs74086973	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74086974	0.87[ASN][1000 genomes]
rs74086976	0.87[ASN][1000 genomes]
rs74086980	0.87[ASN][1000 genomes]
rs74086985	0.84[ASN][1000 genomes]
rs74086993	0.84[ASN][1000 genomes]
rs915220	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845198	chr1:71274759-71514969	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71278800-71283600	Weak transcription	NHDF-Ad	bronchial
2	chr1:71279000-71283600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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