Variant report

Variant	rs11803705
Chromosome Location	chr1:215753355-215753356
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:215740316..215746845-chr1:215753198..215759448,8	MCF-7	breast:
2	chr1:215750502..215754220-chr1:215760375..215763243,3	K562	blood:
3	chr1:215749230..215750934-chr1:215753151..215755026,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136636	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10864179	0.80[EUR][1000 genomes]
rs11120592	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1124524	0.85[EUR][1000 genomes]
rs17024879	0.94[CEU][hapmap];0.84[GIH][hapmap];0.80[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs17025030	1.00[ASW][hapmap];0.86[CHB][hapmap];1.00[YRI][hapmap]
rs1876406	0.80[EUR][1000 genomes]
rs2275768	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2797389	0.89[CEU][hapmap];0.87[CHB][hapmap];0.87[EUR][1000 genomes]
rs3767255	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4655284	0.84[ASW][hapmap];0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4655413	0.84[ASW][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap]
rs61830033	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7528121	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1796390	chr1:215561548-215799074	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv430324	chr1:215649163-216082605	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215741800-215786200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:215741800-215809800	Weak transcription	Colonic Mucosa	Colon
3	chr1:215742000-215756000	Weak transcription	Primary B cells from peripheral blood	blood
4	chr1:215742000-215786400	Weak transcription	Thymus	Thymus
5	chr1:215742200-215767600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr1:215742200-215786400	Weak transcription	Primary T cells from cord blood	blood
7	chr1:215742400-215757800	Weak transcription	Dnd41	blood
8	chr1:215742800-215754600	Weak transcription	Spleen	Spleen
9	chr1:215742800-215756600	Weak transcription	Primary B cells from cord blood	blood
10	chr1:215743000-215772400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr1:215743200-215785800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr1:215743600-215755400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr1:215743800-215756400	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr1:215744200-215767400	Weak transcription	Fetal Brain Male	brain
15	chr1:215744400-215754800	Weak transcription	Fetal Brain Female	brain
16	chr1:215744400-215767600	Weak transcription	NHLF	lung
17	chr1:215746400-215756800	Weak transcription	Right Atrium	heart
18	chr1:215746600-215756600	Weak transcription	Fetal Heart	heart
19	chr1:215746600-215757400	Weak transcription	Stomach Mucosa	stomach
20	chr1:215746600-215768000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr1:215747400-215755600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:215747400-215756400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr1:215748000-215755600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr1:215748000-215758000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr1:215748000-215764000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr1:215748200-215755000	Strong transcription	Fetal Intestine Large	intestine
27	chr1:215748200-215755800	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr1:215748200-215757000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr1:215748200-215757400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr1:215748200-215757400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr1:215748200-215760600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr1:215748400-215755200	Strong transcription	H1 Cell Line	embryonic stem cell
33	chr1:215748400-215755800	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr1:215748400-215755800	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr1:215748400-215756000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr1:215748600-215755200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr1:215748600-215755800	Strong transcription	Liver	Liver
38	chr1:215748800-215757600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr1:215749000-215753800	Strong transcription	Muscle Satellite Cultured Cells	--
40	chr1:215749000-215755800	Strong transcription	NHDF-Ad	bronchial
41	chr1:215749400-215753400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr1:215749400-215754000	Strong transcription	K562	blood
43	chr1:215749400-215755000	Strong transcription	Placenta	Placenta
44	chr1:215749400-215755200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr1:215749400-215755200	Strong transcription	Adipose Nuclei	Adipose
46	chr1:215749400-215755200	Strong transcription	Duodenum Mucosa	Duodenum
47	chr1:215749400-215755200	Strong transcription	HepG2	liver
48	chr1:215749400-215755800	Strong transcription	Osteobl	bone
49	chr1:215749400-215756200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
50	chr1:215749400-215762600	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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