Variant report
| Variant | rs11804053 |
|---|---|
| Chromosome Location | chr1:94406558-94406559 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11804187 | 1.00[EUR][1000 genomes] |
| rs11807845 | 1.00[EUR][1000 genomes] |
| rs11811077 | 1.00[EUR][1000 genomes] |
| rs17110878 | 1.00[EUR][1000 genomes] |
| rs17110898 | 1.00[EUR][1000 genomes] |
| rs17878956 | 1.00[EUR][1000 genomes] |
| rs17881957 | 1.00[EUR][1000 genomes] |
| rs17884580 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17884925 | 1.00[EUR][1000 genomes] |
| rs17885147 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34212520 | 1.00[EUR][1000 genomes] |
| rs55734325 | 1.00[AMR][1000 genomes] |
| rs56260099 | 1.00[EUR][1000 genomes] |
| rs57824006 | 1.00[EUR][1000 genomes] |
| rs60114825 | 1.00[EUR][1000 genomes] |
| rs60759501 | 1.00[EUR][1000 genomes] |
| rs61597540 | 1.00[EUR][1000 genomes] |
| rs6677399 | 1.00[EUR][1000 genomes] |
| rs6698242 | 1.00[EUR][1000 genomes] |
| rs74102018 | 1.00[EUR][1000 genomes] |
| rs74102090 | 1.00[EUR][1000 genomes] |
| rs7535837 | 1.00[EUR][1000 genomes] |
| rs7550770 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv516137 | chr1:94404238-94504545 | Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:94375600-94421200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
