Variant report

Variant	rs11804081
Chromosome Location	chr1:10292286-10292287
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11799711	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs34998724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6671413	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757722	chr1:10238070-10582554	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv2758920	chr1:10238070-10582554	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv999251	chr1:10276263-10318163	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10272600-10368200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:10272800-10296600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr1:10276800-10311800	Weak transcription	Hela-S3	cervix
4	chr1:10277000-10322000	Weak transcription	Spleen	Spleen
5	chr1:10278400-10295200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr1:10278400-10302000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr1:10278600-10294800	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr1:10278800-10292400	Weak transcription	Fetal Muscle Leg	muscle
9	chr1:10278800-10296400	Weak transcription	Fetal Lung	lung
10	chr1:10279800-10297800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr1:10281000-10294800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:10284800-10311000	Weak transcription	Small Intestine	intestine
13	chr1:10285000-10294000	Weak transcription	Fetal Stomach	stomach
14	chr1:10285200-10316000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr1:10285400-10294000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr1:10285400-10302400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr1:10285400-10310800	Weak transcription	Aorta	Aorta
18	chr1:10285400-10312600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr1:10285600-10293200	Weak transcription	Fetal Muscle Trunk	muscle
20	chr1:10285600-10294600	Weak transcription	Lung	lung
21	chr1:10285600-10295200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr1:10285800-10293000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr1:10285800-10297000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr1:10286000-10293600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr1:10286000-10298000	Weak transcription	Right Atrium	heart
26	chr1:10286000-10301800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr1:10286000-10303000	Weak transcription	Brain Germinal Matrix	brain
28	chr1:10286200-10292400	Weak transcription	NH-A	brain
29	chr1:10286400-10294600	Weak transcription	Right Ventricle	heart
30	chr1:10286400-10297000	Weak transcription	HSMMtube	muscle
31	chr1:10286600-10294200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr1:10286800-10301600	Weak transcription	Fetal Kidney	kidney
33	chr1:10286800-10305800	Weak transcription	Ovary	ovary
34	chr1:10287400-10292600	Enhancers	HepG2	liver
35	chr1:10287400-10293200	Weak transcription	Left Ventricle	heart
36	chr1:10287400-10312400	Weak transcription	Pancreas	Pancrea
37	chr1:10288600-10296400	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr1:10288800-10292400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr1:10288800-10293200	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr1:10288800-10293800	Weak transcription	Stomach Smooth Muscle	stomach
41	chr1:10289000-10292400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr1:10289000-10292400	Weak transcription	HSMM	muscle
43	chr1:10289000-10295400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr1:10289000-10297200	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr1:10289000-10300600	Weak transcription	Fetal Heart	heart
46	chr1:10289200-10301600	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr1:10289200-10301800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr1:10289200-10317400	Weak transcription	Liver	Liver
49	chr1:10289600-10293400	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr1:10289600-10294400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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