The 2.0 version of rSNPBase

Variant report

Variant rs11805144
Chromosome Location chr1:85834711-85834712
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:51 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85809200-85838400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr1:85814200-85839600 Weak transcription Left Ventricle heart
3 chr1:85816000-85839600 Weak transcription Pancreas Pancrea
4 chr1:85816600-85836800 Weak transcription Fetal Muscle Trunk muscle
5 chr1:85823200-85836800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
6 chr1:85825000-85839000 Weak transcription Aorta Aorta
7 chr1:85826200-85838800 Weak transcription Hela-S3 cervix
8 chr1:85827000-85837800 Weak transcription Rectal Smooth Muscle rectum
9 chr1:85827200-85836800 Weak transcription Adipose Nuclei Adipose
10 chr1:85827200-85839000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr1:85827400-85839400 Weak transcription Fetal Intestine Large intestine
12 chr1:85827600-85836800 Weak transcription HepG2 liver
13 chr1:85828000-85838800 Weak transcription Colon Smooth Muscle Colon
14 chr1:85829400-85836800 Weak transcription Brain Anterior Caudate brain
15 chr1:85829400-85838400 Weak transcription Fetal Kidney kidney
16 chr1:85829600-85839000 Weak transcription Skeletal Muscle Female skeletal muscle
17 chr1:85830000-85835600 Weak transcription Psoas Muscle Psoas
18 chr1:85831600-85836800 Weak transcription Small Intestine intestine
19 chr1:85831800-85836800 Weak transcription Sigmoid Colon Sigmoid Colon
20 chr1:85832200-85836600 Weak transcription Rectal Mucosa Donor 31 rectum
21 chr1:85832600-85835600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
22 chr1:85832800-85835000 Weak transcription A549 lung
23 chr1:85832800-85836400 Weak transcription ES-I3 Cell Line embryonic stem cell
24 chr1:85832800-85838400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
25 chr1:85832800-85838800 Weak transcription HSMMtube muscle
26 chr1:85832800-85839600 Weak transcription HMEC breast
27 chr1:85833000-85836000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
28 chr1:85833000-85838400 Weak transcription NHEK skin
29 chr1:85833200-85836600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
30 chr1:85833200-85837000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
31 chr1:85833400-85836800 Weak transcription Cortex derived primary cultured neurospheres brain
32 chr1:85833400-85839000 Weak transcription NH-A brain
33 chr1:85833600-85834800 Enhancers Osteobl bone
34 chr1:85833800-85834800 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
35 chr1:85833800-85834800 Enhancers Fetal Intestine Small intestine
36 chr1:85833800-85835000 Enhancers Fetal Stomach stomach
37 chr1:85834000-85834800 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
38 chr1:85834000-85834800 Enhancers Fetal Muscle Leg muscle
39 chr1:85834000-85835600 Enhancers Liver Liver
40 chr1:85834000-85836200 Weak transcription Muscle Satellite Cultured Cells --
41 chr1:85834200-85835000 Weak transcription HSMM muscle
42 chr1:85834200-85836800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
43 chr1:85834200-85839000 Weak transcription Duodenum Smooth Muscle Duodenum
44 chr1:85834400-85835600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
45 chr1:85834400-85838000 Weak transcription NHLF lung
46 chr1:85834400-85838200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
47 chr1:85834400-85839800 Weak transcription Stomach Mucosa stomach
48 chr1:85834600-85835800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
49 chr1:85834600-85835800 Weak transcription NHDF-Ad bronchial
50 chr1:85834600-85836800 Weak transcription HUVEC blood vessel

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Last update: Aug 31, 2015