Variant report

Variant	rs11805631
Chromosome Location	chr1:160880961-160880962
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10908810	0.83[AFR][1000 genomes]
rs11265522	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11265526	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11265533	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11265534	0.81[AMR][1000 genomes]
rs12126310	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12135639	0.84[AFR][1000 genomes]
rs2184066	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28368883	0.81[EUR][1000 genomes]
rs34655593	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3829790	0.87[AMR][1000 genomes]
rs4656968	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4656971	0.87[AMR][1000 genomes]
rs4656972	0.80[AMR][1000 genomes]
rs61802165	0.85[AMR][1000 genomes]
rs6680969	0.82[AMR][1000 genomes]
rs6691389	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7526396	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs955615	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	esv3430322	chr1:160851829-160920480	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv947200	chr1:160870136-160905390	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160876600-160881200	Weak transcription	Stomach Mucosa	stomach
2	chr1:160879200-160881200	Weak transcription	Ovary	ovary
3	chr1:160879200-160881400	Weak transcription	Right Atrium	heart
4	chr1:160879800-160881400	Enhancers	Fetal Heart	heart
5	chr1:160880000-160881000	Weak transcription	Left Ventricle	heart
6	chr1:160880000-160884400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:160880200-160881000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:160880600-160881400	Enhancers	Pancreas	Pancrea
9	chr1:160880600-160881600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:160880600-160882600	Enhancers	Fetal Intestine Large	intestine
11	chr1:160880600-160884000	Enhancers	Fetal Intestine Small	intestine
12	chr1:160880800-160882200	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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