Variant report

Variant	rs11806648
Chromosome Location	chr1:220854674-220854675
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10158764	1.00[AMR][1000 genomes]
rs10495148	1.00[AMR][1000 genomes]
rs11799728	1.00[AMR][1000 genomes]
rs11800654	1.00[AMR][1000 genomes]
rs11800803	1.00[AMR][1000 genomes]
rs11801239	1.00[AMR][1000 genomes]
rs11802247	1.00[AMR][1000 genomes]
rs11802248	1.00[AMR][1000 genomes]
rs11806710	1.00[AMR][1000 genomes]
rs11807413	1.00[AMR][1000 genomes]
rs11808530	1.00[AMR][1000 genomes]
rs11810690	1.00[AMR][1000 genomes]
rs11811042	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11811445	1.00[AMR][1000 genomes]
rs11811872	1.00[AMR][1000 genomes]
rs17007924	1.00[AMR][1000 genomes]
rs17008033	1.00[AMR][1000 genomes]
rs17008084	1.00[AMR][1000 genomes]
rs17008159	1.00[AMR][1000 genomes]
rs17008391	1.00[AMR][1000 genomes]
rs3849285	1.00[AMR][1000 genomes]
rs3897868	1.00[AMR][1000 genomes]
rs3897869	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61195656	1.00[AMR][1000 genomes]
rs6665732	1.00[AMR][1000 genomes]
rs6670387	1.00[AMR][1000 genomes]
rs6696558	1.00[AMR][1000 genomes]
rs6704108	1.00[AMR][1000 genomes]
rs7512854	1.00[AMR][1000 genomes]
rs7519187	1.00[AMR][1000 genomes]
rs7523054	1.00[AMR][1000 genomes]
rs7524156	1.00[AMR][1000 genomes]
rs7530121	1.00[AMR][1000 genomes]
rs7550011	1.00[AMR][1000 genomes]
rs767374	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468194	chr1:220845610-220885612	Bivalent Enhancer Strong transcription Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv549227	chr1:220845610-220885612	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2754270	chr1:220850116-220929155	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv945302	chr1:220851349-220854713	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220853600-220854800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr1:220853600-220854800	Enhancers	Adipose Nuclei	Adipose
3	chr1:220853600-220854800	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr1:220853600-220854800	Enhancers	Stomach Mucosa	stomach
5	chr1:220853600-220854800	Enhancers	HepG2	liver
6	chr1:220854400-220854800	Enhancers	Ovary	ovary
7	chr1:220854400-220854800	Flanking Active TSS	Hela-S3	cervix
8	chr1:220854400-220854800	Enhancers	HUVEC	blood vessel
9	chr1:220854400-220854800	Enhancers	NHLF	lung
10	chr1:220854400-220855200	Flanking Active TSS	Duodenum Mucosa	Duodenum
11	chr1:220854600-220854800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr1:220854600-220854800	Flanking Active TSS	Liver	Liver
13	chr1:220854600-220855000	Active TSS	Duodenum Smooth Muscle	Duodenum
14	chr1:220854600-220855200	Active TSS	NHDF-Ad	bronchial
15	chr1:220854600-220863200	Weak transcription	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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