The 2.0 version of rSNPBase

Variant report

Variant rs11806874
Chromosome Location chr1:94223138-94223139
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:94216000-94224800 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr1:94216400-94223800 Weak transcription Fetal Intestine Small intestine
3 chr1:94216800-94224400 Weak transcription Right Atrium heart
4 chr1:94217600-94223200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
5 chr1:94218000-94223200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
6 chr1:94218000-94223800 Weak transcription Thymus Thymus
7 chr1:94218000-94224200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
8 chr1:94218800-94223600 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
9 chr1:94218800-94225200 Enhancers NHLF lung
10 chr1:94219600-94223800 Weak transcription Spleen Spleen
11 chr1:94219600-94224200 Weak transcription Fetal Thymus thymus
12 chr1:94219800-94223800 Enhancers Hela-S3 cervix
13 chr1:94219800-94224800 Weak transcription Brain Hippocampus Middle brain
14 chr1:94219800-94226200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
15 chr1:94219800-94231600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr1:94220000-94223200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
17 chr1:94220000-94224200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
18 chr1:94220000-94224800 Weak transcription Brain Cingulate Gyrus brain
19 chr1:94220000-94254200 Weak transcription Aorta Aorta
20 chr1:94220200-94224200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
21 chr1:94220600-94223800 Weak transcription Primary hematopoietic stem cells short term culture blood
22 chr1:94220600-94224200 Weak transcription HSMMtube muscle
23 chr1:94221200-94225600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
24 chr1:94221200-94225600 Enhancers Fetal Lung lung
25 chr1:94221200-94226600 Enhancers Placenta Placenta
26 chr1:94221400-94224200 Weak transcription NH-A brain
27 chr1:94221400-94225600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
28 chr1:94221400-94225600 Genic enhancers HMEC breast
29 chr1:94221600-94224400 Enhancers Skeletal Muscle Male skeletal muscle
30 chr1:94221800-94223600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
31 chr1:94221800-94223800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
32 chr1:94222200-94224400 Weak transcription A549 lung
33 chr1:94222200-94225000 Enhancers Skeletal Muscle Female skeletal muscle
34 chr1:94222400-94224000 Enhancers HepG2 liver
35 chr1:94222400-94224200 Weak transcription Fetal Stomach stomach
36 chr1:94222400-94225000 Enhancers Fetal Muscle Leg muscle
37 chr1:94222400-94225600 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
38 chr1:94222400-94225800 Enhancers Adipose Nuclei Adipose
39 chr1:94222400-94228200 Enhancers Primary Natural Killer cells fromperipheralblood blood
40 chr1:94222600-94224200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr1:94222600-94224200 Weak transcription HSMM muscle
42 chr1:94222600-94225200 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
43 chr1:94222600-94225600 Enhancers Fetal Muscle Trunk muscle
44 chr1:94222600-94225600 Enhancers Lung lung
45 chr1:94222800-94223600 Enhancers Brain Anterior Caudate brain
46 chr1:94222800-94223800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
47 chr1:94222800-94224400 Weak transcription Muscle Satellite Cultured Cells --
48 chr1:94222800-94224600 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
49 chr1:94222800-94224800 Enhancers Cortex derived primary cultured neurospheres brain
50 chr1:94222800-94225000 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived

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Last update: Aug 31, 2015