Variant report

Variant	rs11806948
Chromosome Location	chr1:197287248-197287249
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11806323	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11809356	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16841318	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs60959014	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6679097	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6695937	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7535048	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197279400-197290000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr1:197284400-197290200	Weak transcription	Brain Angular Gyrus	brain
3	chr1:197284400-197290200	Weak transcription	Brain Germinal Matrix	brain
4	chr1:197284400-197296800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:197284600-197289200	Weak transcription	Brain Anterior Caudate	brain
6	chr1:197284600-197289200	Weak transcription	Brain Substantia Nigra	brain
7	chr1:197284600-197289600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:197284600-197290000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr1:197284800-197289600	Weak transcription	Brain Hippocampus Middle	brain
10	chr1:197284800-197289800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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