Variant report

Variant	rs11808140
Chromosome Location	chr1:197809810-197809811
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11799471	0.91[AFR][1000 genomes]
rs11800936	0.91[AFR][1000 genomes]
rs11801895	0.91[AFR][1000 genomes]
rs11802251	0.91[AFR][1000 genomes]
rs11802940	0.91[AFR][1000 genomes]
rs11803371	0.91[AFR][1000 genomes]
rs11803914	0.91[AFR][1000 genomes]
rs11804072	0.91[AFR][1000 genomes]
rs11804259	0.91[AFR][1000 genomes]
rs11805399	0.91[AFR][1000 genomes]
rs11805812	0.91[AFR][1000 genomes]
rs11806492	0.91[AFR][1000 genomes]
rs11806557	0.91[AFR][1000 genomes]
rs11806645	0.91[AFR][1000 genomes]
rs11806651	0.91[AFR][1000 genomes]
rs11806821	0.91[AFR][1000 genomes]
rs11806872	0.91[AFR][1000 genomes]
rs11810711	0.91[AFR][1000 genomes]
rs11811376	0.91[AFR][1000 genomes]
rs6667565	0.91[AFR][1000 genomes]
rs6698391	0.91[AFR][1000 genomes]
rs6704185	1.00[AFR][1000 genomes]
rs9661515	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009697	chr1:197804294-197825037	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197808000-197810400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr1:197808000-197814400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:197808400-197810600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr1:197808400-197810800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:197808600-197810600	Weak transcription	NHDF-Ad	bronchial
6	chr1:197808600-197810600	Weak transcription	Osteobl	bone
7	chr1:197808600-197811200	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr1:197808600-197811200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr1:197808600-197811200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr1:197808800-197812600	Weak transcription	NHEK	skin
11	chr1:197809000-197810400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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