Variant report
| Variant | rs11808530 |
|---|---|
| Chromosome Location | chr1:220849866-220849867 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:220848519..220851962-chr1:220854951..220857000,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs10158764 | 1.00[AMR][1000 genomes] |
| rs10495148 | 1.00[AMR][1000 genomes] |
| rs11799728 | 1.00[AMR][1000 genomes] |
| rs11800654 | 1.00[AMR][1000 genomes] |
| rs11800803 | 1.00[AMR][1000 genomes] |
| rs11801239 | 1.00[AMR][1000 genomes] |
| rs11802247 | 1.00[AMR][1000 genomes] |
| rs11802248 | 1.00[AMR][1000 genomes] |
| rs11806648 | 1.00[AMR][1000 genomes] |
| rs11806710 | 1.00[AMR][1000 genomes] |
| rs11807413 | 1.00[AMR][1000 genomes] |
| rs11810690 | 1.00[AMR][1000 genomes] |
| rs11811042 | 1.00[AMR][1000 genomes] |
| rs11811445 | 1.00[AMR][1000 genomes] |
| rs11811872 | 1.00[AMR][1000 genomes] |
| rs17007924 | 1.00[AMR][1000 genomes] |
| rs17008033 | 1.00[AMR][1000 genomes] |
| rs17008084 | 1.00[AMR][1000 genomes] |
| rs17008159 | 1.00[AMR][1000 genomes] |
| rs17008391 | 1.00[AMR][1000 genomes] |
| rs3849285 | 1.00[AMR][1000 genomes] |
| rs3897868 | 1.00[AMR][1000 genomes] |
| rs3897869 | 1.00[AMR][1000 genomes] |
| rs61195656 | 1.00[AMR][1000 genomes] |
| rs6660112 | 1.00[AMR][1000 genomes] |
| rs6665732 | 1.00[AMR][1000 genomes] |
| rs6670387 | 1.00[AMR][1000 genomes] |
| rs6696558 | 1.00[AMR][1000 genomes] |
| rs6704108 | 1.00[AMR][1000 genomes] |
| rs7512854 | 1.00[AMR][1000 genomes] |
| rs7519187 | 1.00[AMR][1000 genomes] |
| rs7523054 | 1.00[AMR][1000 genomes] |
| rs7524156 | 1.00[AMR][1000 genomes] |
| rs7530121 | 1.00[AMR][1000 genomes] |
| rs7550011 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv468194 | chr1:220845610-220885612 | Bivalent Enhancer Strong transcription Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv549227 | chr1:220845610-220885612 | Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:220848000-220853600 | Weak transcription | Duodenum Mucosa | Duodenum |
