Variant report

Variant	rs11809356
Chromosome Location	chr1:197293463-197293464
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11806323	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11806948	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16841237	0.83[ASW][hapmap]
rs16841318	0.88[YRI][hapmap];0.90[AMR][1000 genomes]
rs60959014	0.90[AMR][1000 genomes]
rs6679097	0.89[YRI][hapmap];0.90[AMR][1000 genomes]
rs6695937	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7535048	0.86[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197284400-197296800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:197290600-197297800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr1:197290800-197296400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr1:197290800-197296400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr1:197290800-197297400	Weak transcription	Brain Substantia Nigra	brain
6	chr1:197291000-197294200	Weak transcription	Brain Germinal Matrix	brain
7	chr1:197291000-197297800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr1:197291200-197295200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:197291400-197293800	Weak transcription	Brain Hippocampus Middle	brain
10	chr1:197293400-197293800	Weak transcription	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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