Variant report

Variant	rs11809826
Chromosome Location	chr1:85767760-85767761
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11161614	1.00[YRI][hapmap]
rs11802390	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11802530	1.00[AMR][1000 genomes]
rs11802673	1.00[AMR][1000 genomes]
rs11806417	1.00[AMR][1000 genomes]
rs11808537	1.00[AMR][1000 genomes]
rs11809702	1.00[AMR][1000 genomes]
rs11809833	1.00[AMR][1000 genomes]
rs11811123	1.00[AMR][1000 genomes]
rs12033170	1.00[YRI][hapmap]
rs17384381	1.00[YRI][hapmap]
rs233070	1.00[AMR][1000 genomes]
rs34609757	1.00[AMR][1000 genomes]
rs34799808	1.00[AMR][1000 genomes]
rs36069698	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006994	chr1:85454304-86327679	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	esv34165	chr1:85542040-85846249	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv830459	chr1:85589585-85786311	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85743000-85773600	Weak transcription	Right Atrium	heart
2	chr1:85764200-85768400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:85764400-85768000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:85764400-85769000	Weak transcription	Fetal Stomach	stomach
5	chr1:85764400-85774000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr1:85764800-85768800	Weak transcription	Adipose Nuclei	Adipose
7	chr1:85764800-85770400	Weak transcription	NHDF-Ad	bronchial
8	chr1:85765000-85768200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr1:85765000-85769000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:85765200-85773600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:85765200-85773600	Weak transcription	HMEC	breast
12	chr1:85765400-85767800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:85765600-85768000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr1:85765600-85768000	Weak transcription	Lung	lung
15	chr1:85767000-85768200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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