Variant report

Variant	rs11810041
Chromosome Location	chr1:197235171-197235172
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10494748	0.85[AMR][1000 genomes]
rs10494749	0.85[AMR][1000 genomes]
rs10494750	0.85[AMR][1000 genomes]
rs10494751	0.85[AMR][1000 genomes]
rs11800461	0.85[AMR][1000 genomes]
rs11801772	0.85[AMR][1000 genomes]
rs11803081	0.81[YRI][hapmap];0.85[AMR][1000 genomes]
rs11808524	0.85[AMR][1000 genomes]
rs11808883	0.85[AMR][1000 genomes]
rs11811295	0.85[AMR][1000 genomes]
rs1337165	0.85[AMR][1000 genomes]
rs16841212	0.85[AMR][1000 genomes]
rs16841214	0.85[AMR][1000 genomes]
rs16841219	0.85[AMR][1000 genomes]
rs16841220	0.85[AMR][1000 genomes]
rs16841237	0.85[AMR][1000 genomes]
rs16841270	0.85[AMR][1000 genomes]
rs61170532	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3383043	chr1:197235011-197235594	Inactive region	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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