Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11118661	1.00[EUR][1000 genomes]
rs11804822	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12057905	1.00[EUR][1000 genomes]
rs12072517	1.00[EUR][1000 genomes]
rs12073583	1.00[EUR][1000 genomes]
rs12085527	1.00[EUR][1000 genomes]
rs12086603	1.00[EUR][1000 genomes]
rs12086869	1.00[EUR][1000 genomes]
rs12097387	1.00[EUR][1000 genomes]
rs58220035	1.00[EUR][1000 genomes]
rs58582639	1.00[EUR][1000 genomes]
rs60865356	1.00[EUR][1000 genomes]
rs61501165	1.00[EUR][1000 genomes]
rs6663534	1.00[EUR][1000 genomes]
rs6667275	1.00[EUR][1000 genomes]
rs73094956	1.00[EUR][1000 genomes]
rs73101522	1.00[EUR][1000 genomes]
rs74143435	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74143437	1.00[EUR][1000 genomes]
rs74144384	1.00[EUR][1000 genomes]
rs74144425	1.00[EUR][1000 genomes]
rs7522887	1.00[EUR][1000 genomes]
rs7536615	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873199	chr1:221136672-221451217	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221250400-221261200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr1:221258800-221259800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:221258800-221259800	Enhancers	Adipose Nuclei	Adipose
4	chr1:221258800-221259800	Enhancers	Hela-S3	cervix
5	chr1:221258800-221260000	Enhancers	NHDF-Ad	bronchial
6	chr1:221258800-221260600	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr1:221259000-221259800	Enhancers	HSMM	muscle
8	chr1:221259000-221260000	Enhancers	NHLF	lung
9	chr1:221259000-221260200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:221259200-221260400	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr1:221259400-221259800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:221259400-221260200	Enhancers	A549	lung
13	chr1:221259600-221259800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr1:221259600-221259800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:221259600-221260000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr1:221259600-221260000	Enhancers	Small Intestine	intestine
17	chr1:221259600-221261200	Weak transcription	Muscle Satellite Cultured Cells	--

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