Variant report

Variant	rs11813092
Chromosome Location	chr10:53001965-53001966
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:53000277..53002226-chr10:53004321..53006404,2	K562	blood:

Variant related genes	Relation type
ENSG00000231132	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11818857	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12264657	1.00[CEU][hapmap]
rs16914946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16915429	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7099483	1.00[EUR][1000 genomes]
rs73335811	1.00[EUR][1000 genomes]
rs73335813	1.00[EUR][1000 genomes]
rs7905752	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	esv2757383	chr10:52995974-53015583	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	esv2759750	chr10:52995974-53015583	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	esv1822881	chr10:52999550-53002930	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52991200-53003000	Weak transcription	Left Ventricle	heart
2	chr10:52992000-53006200	Weak transcription	Aorta	Aorta
3	chr10:52992200-53003600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:52992200-53009600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:52992800-53002200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr10:52993000-53003200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr10:52994000-53003200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr10:52999800-53004600	Weak transcription	Right Atrium	heart
9	chr10:53000000-53004400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr10:53000400-53002000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:53000400-53004200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:53000600-53004000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:53001200-53002000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr10:53001200-53005800	Weak transcription	Colon Smooth Muscle	Colon
15	chr10:53001400-53003200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr10:53001600-53002200	Enhancers	Brain Germinal Matrix	brain
17	chr10:53001600-53002800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr10:53001800-53003400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:53001800-53004200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr10:53001800-53004800	Enhancers	Psoas Muscle	Psoas
21	chr10:53001800-53005800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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