Variant report

Variant	rs11815156
Chromosome Location	chr10:50796426-50796427
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50795041..50796661-chr10:50797762..50799638,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1130028	0.85[EUR][1000 genomes]
rs11812473	0.83[EUR][1000 genomes]
rs11819019	0.85[EUR][1000 genomes]
rs17010079	0.83[EUR][1000 genomes]
rs17719092	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17775180	0.87[EUR][1000 genomes]
rs2228526	0.87[EUR][1000 genomes]
rs2228527	0.86[EUR][1000 genomes]
rs2228529	0.85[EUR][1000 genomes]
rs36079558	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4253011	0.88[EUR][1000 genomes]
rs4253028	0.88[EUR][1000 genomes]
rs4253042	0.88[EUR][1000 genomes]
rs4253049	0.88[EUR][1000 genomes]
rs4253055	0.88[EUR][1000 genomes]
rs4253101	0.86[EUR][1000 genomes]
rs4253106	0.87[EUR][1000 genomes]
rs4253121	0.87[EUR][1000 genomes]
rs4253165	0.87[EUR][1000 genomes]
rs4253166	0.87[EUR][1000 genomes]
rs4253193	0.87[EUR][1000 genomes]
rs56164647	0.85[EUR][1000 genomes]
rs58002245	0.87[EUR][1000 genomes]
rs58711755	0.88[EUR][1000 genomes]
rs58912975	0.83[EUR][1000 genomes]
rs59898389	0.88[EUR][1000 genomes]
rs61846612	0.88[EUR][1000 genomes]
rs61846615	0.88[EUR][1000 genomes]
rs61846616	0.89[EUR][1000 genomes]
rs61846617	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61846618	0.90[EUR][1000 genomes]
rs61846620	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61846637	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61850971	0.83[EUR][1000 genomes]
rs61850976	0.84[EUR][1000 genomes]
rs7067651	0.83[EUR][1000 genomes]
rs7073830	0.87[EUR][1000 genomes]
rs7093098	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7097122	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7097866	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7909222	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7920256	0.87[EUR][1000 genomes]
rs971667	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50794200-50797400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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