Variant report

Variant	rs11816871
Chromosome Location	chr10:119162326-119162327
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:119150900..119153984-chr10:119161520..119164419,3	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11815112	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12252333	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12256256	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs12337	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs17545115	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17545387	0.84[CEU][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17546173	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17627160	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs17627569	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs363226	0.81[CEU][hapmap]
rs61865312	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61865314	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61865317	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7067870	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7100905	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7900213	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7902117	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7908406	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7909861	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7917325	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7924178	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11816871	SLC18A2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119151800-119164400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr10:119159200-119163000	Weak transcription	Liver	Liver
3	chr10:119159600-119164400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr10:119159800-119162400	Weak transcription	HepG2	liver
5	chr10:119159800-119164000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr10:119160000-119172400	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr10:119161800-119163200	Enhancers	K562	blood
8	chr10:119162200-119166200	Weak transcription	Primary hematopoietic stem cells	blood

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