Variant report
| Variant | rs11817085 |
|---|---|
| Chromosome Location | chr10:118095571-118095572 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| Variant related genes | Relation type |
|---|---|
| CCDC172 | TF binding region |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs10490910 | 0.98[ASN][1000 genomes] |
| rs11817803 | 0.96[ASN][1000 genomes] |
| rs12414617 | 0.85[ASN][1000 genomes] |
| rs12416076 | 0.96[ASN][1000 genomes] |
| rs12416239 | 0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1419872 | 0.96[ASN][1000 genomes] |
| rs17094504 | 0.94[ASN][1000 genomes] |
| rs17094520 | 0.98[ASN][1000 genomes] |
| rs2286630 | 0.98[ASN][1000 genomes] |
| rs35997739 | 0.85[ASN][1000 genomes] |
| rs41386650 | 0.97[ASN][1000 genomes] |
| rs4508123 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58693853 | 0.94[ASN][1000 genomes] |
| rs73373031 | 0.86[ASN][1000 genomes] |
| rs73374910 | 0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3449389 | chr10:117806874-118102404 | Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv832000 | chr10:117944492-118116253 | Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv1047591 | chr10:118087220-118126822 | Enhancers Weak transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
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