Variant report

Variant	rs11818857
Chromosome Location	chr10:52935319-52935320
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11813092	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16914946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16915429	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7099483	1.00[EUR][1000 genomes]
rs73335811	1.00[EUR][1000 genomes]
rs73335813	1.00[EUR][1000 genomes]
rs7905752	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	esv3414975	chr10:52934892-52935394	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52910600-52942400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:52929800-52944600	Weak transcription	Left Ventricle	heart
3	chr10:52931000-52936400	Weak transcription	HSMM	muscle
4	chr10:52931400-52936200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr10:52931400-52936400	Weak transcription	HSMMtube	muscle
6	chr10:52931600-52936400	Weak transcription	NHLF	lung
7	chr10:52931600-52936600	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:52931800-52936400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr10:52932200-52936400	Weak transcription	Osteobl	bone
10	chr10:52932400-52936400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:52932600-52936400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:52932600-52936400	Weak transcription	NHDF-Ad	bronchial
13	chr10:52934600-52937200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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