Variant report

Variant	rs11820362
Chromosome Location	chr11:71050038-71050039
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:71041687..71044561-chr11:71049018..71051150,2	MCF-7	breast:
2	chr11:71048396..71050924-chr11:71054660..71057608,2	K562	blood:
3	chr11:71042313..71044030-chr11:71049269..71051334,2	MCF-7	breast:
4	chr11:71036748..71038404-chr11:71049363..71052229,2	MCF-7	breast:
5	chr11:71049379..71051906-chr11:71055170..71057391,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10792616	0.81[EUR][1000 genomes]
rs56670591	0.86[EUR][1000 genomes]
rs57938057	0.90[AFR][1000 genomes]
rs6592055	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536060	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71048200-71051200	Enhancers	Fetal Stomach	stomach
2	chr11:71048200-71052000	Enhancers	Fetal Lung	lung
3	chr11:71048600-71050200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:71048800-71050200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:71048800-71050200	Weak transcription	Esophagus	oesophagus
6	chr11:71049000-71050200	Weak transcription	Fetal Intestine Large	intestine
7	chr11:71049200-71051400	Bivalent Enhancer	Fetal Muscle Leg	muscle
8	chr11:71049400-71050200	Enhancers	NHLF	lung
9	chr11:71049400-71051400	Enhancers	Fetal Thymus	thymus
10	chr11:71049600-71050200	Enhancers	Ovary	ovary
11	chr11:71049600-71050600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:71049600-71050800	Enhancers	Rectal Smooth Muscle	rectum
13	chr11:71049600-71052000	Enhancers	Fetal Kidney	kidney
14	chr11:71049800-71050200	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:71049800-71050200	Enhancers	Colon Smooth Muscle	Colon
16	chr11:71049800-71050800	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr11:71049800-71051000	Enhancers	Brain Angular Gyrus	brain
18	chr11:71050000-71050200	Enhancers	Brain Hippocampus Middle	brain
19	chr11:71050000-71050200	Flanking Active TSS	Stomach Smooth Muscle	stomach
20	chr11:71050000-71050400	Enhancers	NHEK	skin
21	chr11:71050000-71050600	Enhancers	Brain Germinal Matrix	brain
22	chr11:71050000-71050800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr11:71050000-71050800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
24	chr11:71050000-71051600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr11:71050000-71051600	Enhancers	Fetal Intestine Small	intestine

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