Variant report

Variant	rs11823071
Chromosome Location	chr11:17508578-17508579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2072224	0.82[ASN][1000 genomes]
rs2355020	0.86[ASN][1000 genomes]
rs4756894	0.86[ASN][1000 genomes]
rs4756896	0.86[ASN][1000 genomes]
rs4756897	0.86[ASN][1000 genomes]
rs4757533	0.86[ASN][1000 genomes]
rs4757536	0.82[ASN][1000 genomes]
rs6486374	0.86[ASN][1000 genomes]
rs6486375	0.86[ASN][1000 genomes]
rs6486376	0.86[ASN][1000 genomes]
rs6486377	0.86[ASN][1000 genomes]
rs7129639	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17505800-17508800	Enhancers	Fetal Intestine Small	intestine
2	chr11:17506200-17508800	Enhancers	Fetal Intestine Large	intestine
3	chr11:17507800-17515800	Weak transcription	Gastric	stomach
4	chr11:17508000-17508600	Enhancers	HepG2	liver
5	chr11:17508000-17510600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr11:17508200-17510600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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