Variant report

Variant	rs11823625
Chromosome Location	chr11:56587630-56587631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr11:56587487-56587710	MCF10A-Er-Src	breast:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:56587595-56587645	HCPEpiC	choroid plexus:	n/a
2	chr11:56587595-56587645	AG04449	skin:	fetal
3	chr11:56587595-56587645	Jurkat	blood:	n/a
4	chr11:56587595-56587645	H1-hESC	embryonic stem cell:	embryo
5	chr11:56587595-56587645	NB4	blood:	n/a
6	chr11:56587595-56587645	Hepatocyte	liver:	n/a
7	chr11:56587595-56587645	CMK	blood:	n/a
8	chr11:56587595-56587645	AoSMC	blood vessel:	n/a
9	chr11:56587595-56587645	T-47D	breast:	n/a
10	chr11:56587595-56587645	AG04450	lung:	fetal
11	chr11:56587595-56587645	GM19239	blood:	n/a
12	chr11:56587595-56587645	HCF	heart:	n/a
13	chr11:56587595-56587645	Hela-S3	cervix:	n/a
14	chr11:56587595-56587645	HCT-116	colon:	n/a
15	chr11:56587595-56587645	BE2_C	brain:	n/a
16	chr11:56587595-56587645	SKMC	muscle:	n/a
17	chr11:56587595-56587645	HepG2	liver:	n/a
18	chr11:56587595-56587645	A549	lung:	n/a
19	chr11:56587595-56587645	PANC-1	pancreas:	n/a
20	chr11:56587595-56587645	AG09309	skin:	n/a
21	chr11:56587595-56587645	HRPEpiC	eye:	n/a
22	chr11:56587595-56587645	HUVEC	blood vessel:	n/a
23	chr11:56587595-56587645	SK-N-SH	brain:	n/a
24	chr11:56587595-56587645	HMEC	breast:	n/a
25	chr11:56587595-56587645	GM06990	blood:	n/a
26	chr11:56587595-56587645	PrEC	prostate:	n/a
27	chr11:56587595-56587645	HRE	kidney:	n/a
28	chr11:56587595-56587645	ECC-1	luminal epithelium:	n/a
29	chr11:56587595-56587645	MCF-7	breast:	n/a
30	chr11:56587595-56587645	ProgFib	skin:	n/a
31	chr11:56587595-56587645	RPTEC	kidney:	n/a
32	chr11:56587595-56587645	HEK293	kidney:	embryo
33	chr11:56587595-56587645	HRCEpiC	kidney:	n/a
34	chr11:56587595-56587645	IMR90	lung:	fetal
35	chr11:56587595-56587645	U87	brain:	n/a
36	chr11:56587595-56587645	HNPCEpiC	eye:	n/a
37	chr11:56587595-56587645	HPAEpiC	pulmonary alveolar:	n/a
38	chr11:56587595-56587645	HCM	heart:	n/a
39	chr11:56587595-56587645	HL-60	blood:	n/a
40	chr11:56587595-56587645	HAEpiC	amniotic membrane:	n/a
41	chr11:56587595-56587645	SK-N-SH_RA	brain:	n/a
42	chr11:56587595-56587645	MCF10A-Er-Src	breast:	n/a
43	chr11:56587595-56587645	BJ	skin:	n/a
44	chr11:56587595-56587645	GM12892	blood:	n/a
45	chr11:56587595-56587645	LNCaP	prostate:	n/a
46	chr11:56587595-56587645	PFSK-1	brain:	n/a
47	chr11:56587595-56587645	SK-N-MC	brain:	n/a
48	chr11:56587595-56587645	K562	blood:	n/a
49	chr11:56587595-56587645	NHDF-neo	bronchial:	n/a
50	chr11:56587595-56587645	NHBE	bronchial:	n/a

No data

Variant related genes	Relation type
OR5G5P	TF binding region
OR5G5P	CpG island

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11228790	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs488445	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs546954	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs547707	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs562063	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs572571	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs585989	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs652689	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs679124	0.93[ASN][1000 genomes]
rs7105581	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs764858	0.92[ASN][1000 genomes]
rs7941339	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949349	chr11:56371633-56593610	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1048328	chr11:56471984-56649908	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	esv2830406	chr11:56481955-56650124	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv468577	chr11:56503728-56704042	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
5	nsv555101	chr11:56503728-56704042	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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