Variant report

Variant	rs11824342
Chromosome Location	chr11:76504449-76504450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76504410..76507803-chr11:76511412..76514048,3	MCF-7	breast:
2	chr11:76499655..76502011-chr11:76503724..76505940,3	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11823159	1.00[AMR][1000 genomes]
rs750903	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897931	chr11:76489673-76540708	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76496000-76506800	Weak transcription	Aorta	Aorta
2	chr11:76496200-76513800	Weak transcription	Fetal Kidney	kidney
3	chr11:76496600-76509800	Weak transcription	Colon Smooth Muscle	Colon
4	chr11:76496800-76507400	Enhancers	Stomach Mucosa	stomach
5	chr11:76496800-76510000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr11:76498400-76505800	Enhancers	Placenta	Placenta
7	chr11:76499000-76510200	Weak transcription	Thymus	Thymus
8	chr11:76500000-76504600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr11:76500000-76506400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr11:76500400-76505600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:76500400-76509800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr11:76500400-76510000	Weak transcription	Brain Hippocampus Middle	brain
13	chr11:76500800-76510000	Weak transcription	Brain Substantia Nigra	brain
14	chr11:76501600-76505000	Weak transcription	Right Atrium	heart
15	chr11:76502200-76505400	Genic enhancers	HMEC	breast
16	chr11:76502400-76505400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr11:76502600-76505400	Enhancers	Osteobl	bone
18	chr11:76502800-76504800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:76503000-76506200	Enhancers	Fetal Intestine Large	intestine
20	chr11:76503200-76506600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr11:76503400-76505200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:76503400-76509400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:76503400-76510000	Weak transcription	K562	blood
24	chr11:76503600-76504600	Enhancers	NHDF-Ad	bronchial
25	chr11:76503600-76505400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr11:76503600-76506600	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr11:76503800-76504800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:76503800-76505000	Enhancers	Rectal Mucosa Donor 29	rectum
29	chr11:76503800-76505200	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr11:76503800-76505400	Enhancers	Pancreas	Pancrea
31	chr11:76503800-76505800	Enhancers	Fetal Muscle Leg	muscle
32	chr11:76503800-76506000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr11:76503800-76506200	Transcr. at gene 5' and 3'	A549	lung
34	chr11:76504000-76504600	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr11:76504000-76504600	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr11:76504000-76504600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr11:76504000-76504600	Genic enhancers	Gastric	stomach
38	chr11:76504000-76504600	Genic enhancers	Hela-S3	cervix
39	chr11:76504000-76504800	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr11:76504000-76505000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr11:76504000-76505200	Genic enhancers	Fetal Stomach	stomach
42	chr11:76504000-76505200	Enhancers	Left Ventricle	heart
43	chr11:76504000-76505400	Enhancers	H1 Cell Line	embryonic stem cell
44	chr11:76504000-76505400	Enhancers	Colonic Mucosa	Colon
45	chr11:76504000-76505400	Enhancers	Right Ventricle	heart
46	chr11:76504000-76505400	Enhancers	Stomach Smooth Muscle	stomach
47	chr11:76504000-76505600	Enhancers	HUES48 Cell Line	embryonic stem cell
48	chr11:76504000-76505600	Enhancers	HUES64 Cell Line	embryonic stem cell
49	chr11:76504000-76505600	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr11:76504000-76505600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links