Variant report

Variant	rs11824864
Chromosome Location	chr11:47411736-47411737
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:47409305-47412146	HL-60	blood:	n/a	n/a
2	CBX3	chr11:47411552-47412020	K562	blood:	n/a	n/a
3	RCOR1	chr11:47411682-47412028	K562	blood:	n/a	n/a
4	ZNF143	chr11:47411717-47412026	K562	blood:	n/a	n/a
5	CBX3	chr11:47411644-47412011	K562	blood:	n/a	n/a
6	POLR2A	chr11:47409409-47413887	HL-60	blood:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:47406471..47408632-chr11:47410968..47413513,2	K562	blood:
2	chr11:47395359..47404298-chr11:47408556..47417905,22	K562	blood:
3	chr11:47411317..47413023-chr11:47415148..47417889,3	K562	blood:
4	chr11:47407132..47409487-chr11:47410035..47412468,2	K562	blood:
5	chr11:47411551..47414377-chr11:47444629..47446217,2	K562	blood:
6	chr11:47398614..47400685-chr11:47410760..47413016,2	MCF-7	breast:
7	chr11:47404760..47406669-chr11:47411332..47413231,2	K562	blood:
8	chr11:47411629..47418031-chr11:47425327..47431880,15	K562	blood:
9	chr11:47410723..47415239-chr11:47428368..47430840,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000265910	TF binding region
ENSG00000165915	Chromatin interaction
ENSG00000265910	Chromatin interaction
ENSG00000255197	Chromatin interaction
ENSG00000066336	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1044269	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1051006	0.81[CEU][hapmap]
rs10742805	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs10742806	0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs10742816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10769253	0.81[CEU][hapmap]
rs10769255	0.91[CEU][hapmap]
rs10769267	0.80[ASN][1000 genomes]
rs10838686	0.81[CEU][hapmap]
rs10838689	0.81[CEU][hapmap]
rs11039194	0.82[EUR][1000 genomes]
rs11819955	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.80[EUR][1000 genomes]
rs11820650	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11821273	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11821860	0.83[ASN][1000 genomes]
rs11821917	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11822402	0.83[ASN][1000 genomes]
rs11823490	0.81[EUR][1000 genomes]
rs11824971	0.82[EUR][1000 genomes]
rs11824990	0.80[EUR][1000 genomes]
rs11827106	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11828339	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12419342	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs17198158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17790804	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2242511	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2290148	0.81[CEU][hapmap]
rs3729802	0.85[CEU][hapmap]
rs3740684	0.89[JPT][hapmap]
rs3740685	0.81[ASN][1000 genomes]
rs3781628	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3824867	0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs3847503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4147730	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs4237544	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs4282946	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs4384349	0.86[ASN][1000 genomes]
rs4752783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4752829	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs4752836	0.81[ASN][1000 genomes]
rs4752837	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs4752839	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4752843	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.80[EUR][1000 genomes]
rs4752977	0.81[CEU][hapmap]
rs4752983	0.81[CEU][hapmap]
rs4752992	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56756748	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs59631865	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60380053	0.82[ASN][1000 genomes]
rs60882887	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60929305	0.82[EUR][1000 genomes]
rs61000762	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7101772	0.83[ASN][1000 genomes]
rs7104366	0.80[ASN][1000 genomes]
rs7105122	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs7105907	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs7106142	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7107853	0.81[ASN][1000 genomes]
rs7108143	0.80[ASN][1000 genomes]
rs7111873	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs7117277	0.82[ASN][1000 genomes]
rs7119556	0.80[ASN][1000 genomes]
rs7126210	0.94[JPT][hapmap]
rs7130693	0.82[ASN][1000 genomes]
rs753812	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs753992	0.81[CEU][hapmap]
rs7948705	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs9666924	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9734013	0.82[ASN][1000 genomes]
rs9919526	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897323	chr11:47182926-47460306	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv917316	chr11:47232210-47448882	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	esv3330173	chr11:47289256-47450681	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
4	esv3416377	chr11:47289276-47450651	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
5	nsv832141	chr11:47333180-47520993	Flanking Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
6	nsv825871	chr11:47376020-47457537	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv554210	chr11:47380593-47449544	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
8	nsv541034	chr11:47404083-47440081	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
9	nsv897325	chr11:47411736-47600438	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47399400-47421400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:47399800-47421200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:47400000-47415200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr11:47400000-47416000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:47400000-47416800	Weak transcription	Brain Anterior Caudate	brain
6	chr11:47400000-47421200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:47404400-47412800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:47405000-47412800	Weak transcription	K562	blood
9	chr11:47405400-47415000	Weak transcription	Right Atrium	heart
10	chr11:47408400-47418000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
11	chr11:47408600-47416000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr11:47409200-47417800	Enhancers	Spleen	Spleen
13	chr11:47409400-47414200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:47409400-47414400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr11:47409400-47415000	Enhancers	Primary hematopoietic stem cells	blood
16	chr11:47409600-47412000	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr11:47409600-47415800	Enhancers	Adipose Nuclei	Adipose
18	chr11:47409800-47417600	Enhancers	Fetal Muscle Leg	muscle
19	chr11:47410000-47412200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr11:47410000-47412600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr11:47410000-47416800	Weak transcription	Brain Substantia Nigra	brain
22	chr11:47410200-47412800	Enhancers	Primary T cells fromperipheralblood	blood
23	chr11:47410200-47421200	Weak transcription	Fetal Intestine Small	intestine
24	chr11:47410400-47412000	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr11:47410600-47411800	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr11:47410600-47412000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr11:47410600-47415800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
28	chr11:47410800-47411800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr11:47410800-47412000	Enhancers	Primary T cells from cord blood	blood
30	chr11:47410800-47412400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr11:47410800-47413000	Weak transcription	Brain Hippocampus Middle	brain
32	chr11:47410800-47415600	Weak transcription	Gastric	stomach
33	chr11:47411000-47411800	Flanking Active TSS	Primary B cells from cord blood	blood
34	chr11:47411000-47411800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr11:47411000-47411800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr11:47411000-47412000	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr11:47411000-47412200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
38	chr11:47411000-47412600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr11:47411000-47413400	Enhancers	Fetal Thymus	thymus
40	chr11:47411000-47414200	Enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr11:47411000-47416000	Enhancers	Primary B cells from peripheral blood	blood
42	chr11:47411200-47412400	Enhancers	Duodenum Mucosa	Duodenum
43	chr11:47411400-47412200	Enhancers	Lung	lung
44	chr11:47411400-47413400	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr11:47411400-47413600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr11:47411400-47414600	Enhancers	Primary monocytes fromperipheralblood	blood
47	chr11:47411400-47414600	Weak transcription	Colonic Mucosa	Colon
48	chr11:47411400-47415200	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr11:47411600-47412000	Weak transcription	Placenta	Placenta
50	chr11:47411600-47412600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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