Variant report

Variant	rs11825434
Chromosome Location	chr11:46901574-46901575
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46900186..46902625-chr11:46908336..46911301,2	K562	blood:

Variant related genes	Relation type
ENSG00000134569	Chromatin interaction

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10466476	0.87[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10466477	0.88[CEU][hapmap];0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838634	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038985	1.00[ASN][1000 genomes]
rs11038987	0.88[CEU][hapmap];0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039012	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039015	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607429	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11822959	0.88[CEU][hapmap];0.80[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11824327	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273360	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277006	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12281784	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12287376	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294921	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938534	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17787930	1.00[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2867206	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136433	0.88[CEU][hapmap];1.00[ASN][1000 genomes]
rs3136434	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs3136436	1.00[ASN][1000 genomes]
rs3136439	0.88[CEU][hapmap];1.00[ASN][1000 genomes]
rs3136443	1.00[ASN][1000 genomes]
rs3136446	0.88[CEU][hapmap];1.00[ASN][1000 genomes]
rs3136448	1.00[ASN][1000 genomes]
rs3136467	1.00[ASN][1000 genomes]
rs3136468	1.00[ASN][1000 genomes]
rs3136469	1.00[ASN][1000 genomes]
rs3136472	1.00[ASN][1000 genomes]
rs3136480	1.00[ASN][1000 genomes]
rs3136481	1.00[ASN][1000 genomes]
rs3136482	1.00[ASN][1000 genomes]
rs3136489	1.00[ASN][1000 genomes]
rs3136500	0.88[CEU][hapmap];1.00[ASN][1000 genomes]
rs3136504	1.00[ASN][1000 genomes]
rs3136521	1.00[ASN][1000 genomes]
rs4128315	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4500447	0.82[CEU][hapmap];0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56311746	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56331152	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57368576	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57485117	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5898	0.88[CEU][hapmap];1.00[ASN][1000 genomes]
rs59197251	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60940896	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61382645	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61884270	1.00[ASN][1000 genomes]
rs61884294	1.00[ASN][1000 genomes]
rs61884297	1.00[ASN][1000 genomes]
rs61884303	1.00[ASN][1000 genomes]
rs61884304	1.00[ASN][1000 genomes]
rs61884305	1.00[ASN][1000 genomes]
rs61884306	1.00[ASN][1000 genomes]
rs61884307	1.00[ASN][1000 genomes]
rs61896127	1.00[ASN][1000 genomes]
rs61897302	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897303	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897304	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897308	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61898529	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61898531	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899280	1.00[ASN][1000 genomes]
rs61899282	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899283	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899292	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485700	1.00[CEU][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485706	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102325	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102474	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105052	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105172	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105217	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106323	0.88[CEU][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107703	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7108147	0.88[CEU][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111760	0.88[CEU][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111811	0.80[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112060	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112518	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115038	1.00[CEU][hapmap]
rs7115986	0.88[CEU][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7118097	0.86[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120113	0.89[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123729	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128102	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129622	0.88[CEU][hapmap];0.85[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73456126	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928445	0.88[CEU][hapmap];0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938960	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945548	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947517	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9667108	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9735937	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46868000-46909000	Weak transcription	Small Intestine	intestine
2	chr11:46868600-46917400	Weak transcription	Fetal Brain Male	brain
3	chr11:46868800-46913000	Weak transcription	A549	lung
4	chr11:46875600-46917200	Strong transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:46876000-46905200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:46876600-46911400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:46876600-46916600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:46877400-46909200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:46877400-46909200	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr11:46877400-46912000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:46877400-46912600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr11:46877600-46919000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:46877800-46912200	Strong transcription	Fetal Stomach	stomach
14	chr11:46877800-46912400	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr11:46878000-46908200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:46878400-46909600	Strong transcription	Fetal Muscle Leg	muscle
17	chr11:46878400-46922000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:46879000-46909000	Strong transcription	Duodenum Mucosa	Duodenum
19	chr11:46879800-46918200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr11:46880800-46910800	Strong transcription	Fetal Muscle Trunk	muscle
21	chr11:46883800-46904200	Strong transcription	Stomach Smooth Muscle	stomach
22	chr11:46886000-46921800	Weak transcription	Hela-S3	cervix
23	chr11:46886200-46907000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr11:46887600-46918600	Weak transcription	NHDF-Ad	bronchial
25	chr11:46889400-46901800	Strong transcription	Brain Hippocampus Middle	brain
26	chr11:46889400-46903600	Strong transcription	Brain Substantia Nigra	brain
27	chr11:46892600-46906200	Strong transcription	Brain Inferior Temporal Lobe	brain
28	chr11:46892800-46901600	Strong transcription	Skeletal Muscle Female	skeletal muscle
29	chr11:46892800-46902400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr11:46894400-46903600	Strong transcription	HSMMtube	muscle
31	chr11:46895400-46917400	Weak transcription	NHLF	lung
32	chr11:46896200-46903600	Strong transcription	Fetal Intestine Small	intestine
33	chr11:46896600-46928200	Weak transcription	Fetal Heart	heart
34	chr11:46897000-46903400	Strong transcription	Fetal Kidney	kidney
35	chr11:46897000-46904800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr11:46897400-46907400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr11:46897400-46921800	Weak transcription	HMEC	breast
38	chr11:46897600-46916800	Weak transcription	Psoas Muscle	Psoas
39	chr11:46897600-46917200	Weak transcription	Rectal Smooth Muscle	rectum
40	chr11:46898200-46901800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:46898600-46914400	Weak transcription	Colon Smooth Muscle	Colon
42	chr11:46898600-46916600	Weak transcription	Liver	Liver
43	chr11:46898800-46903200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr11:46898800-46904800	Weak transcription	Esophagus	oesophagus
45	chr11:46898800-46906600	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr11:46898800-46916600	Weak transcription	Gastric	stomach
47	chr11:46898800-46920000	Weak transcription	Stomach Mucosa	stomach
48	chr11:46899000-46903800	Strong transcription	Fetal Lung	lung
49	chr11:46899000-46904600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr11:46899000-46905200	Weak transcription	Lung	lung

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