Variant report

Variant	rs11825565
Chromosome Location	chr11:72068033-72068034
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72066867..72068378-chr11:72072272..72074567,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11824758	0.85[AMR][1000 genomes]
rs11827506	0.85[AMR][1000 genomes]
rs11828128	1.00[MEX][hapmap]
rs11828745	1.00[ASW][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.84[YRI][hapmap]
rs17162146	1.00[MEX][hapmap];0.85[AMR][1000 genomes]
rs34264259	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58007847	0.85[AMR][1000 genomes]
rs60900819	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832206	chr11:72006573-72176017	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72012800-72070600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr11:72033000-72075600	Weak transcription	A549	lung
3	chr11:72038200-72071200	Weak transcription	HMEC	breast
4	chr11:72038400-72076600	Weak transcription	Liver	Liver
5	chr11:72039800-72077400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:72040000-72070800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr11:72040400-72069400	Weak transcription	Fetal Brain Female	brain
8	chr11:72040800-72070800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr11:72041800-72072200	Weak transcription	HUVEC	blood vessel
10	chr11:72041800-72076000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:72043200-72076600	Weak transcription	Primary B cells from peripheral blood	blood
12	chr11:72045800-72094600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr11:72046000-72074200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:72048200-72069400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr11:72050000-72092200	Weak transcription	Pancreas	Pancrea
16	chr11:72059800-72086800	Weak transcription	Fetal Brain Male	brain
17	chr11:72061000-72070200	Weak transcription	Colon Smooth Muscle	Colon
18	chr11:72061000-72075600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:72061200-72071200	Weak transcription	Esophagus	oesophagus
20	chr11:72061200-72074600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr11:72061200-72077800	Weak transcription	Brain Angular Gyrus	brain
22	chr11:72061400-72068800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr11:72061400-72069600	Weak transcription	Brain Germinal Matrix	brain
24	chr11:72061400-72070000	Weak transcription	K562	blood
25	chr11:72061400-72088600	Weak transcription	Ovary	ovary
26	chr11:72061400-72089800	Weak transcription	Brain Anterior Caudate	brain
27	chr11:72061400-72090000	Weak transcription	Brain Hippocampus Middle	brain
28	chr11:72061400-72092200	Weak transcription	Gastric	stomach
29	chr11:72061800-72068200	Weak transcription	Fetal Intestine Small	intestine
30	chr11:72062400-72070000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:72062400-72070400	Strong transcription	Primary B cells from cord blood	blood
32	chr11:72062400-72076200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr11:72062600-72089600	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr11:72063000-72070400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr11:72063000-72073400	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr11:72063400-72069800	Strong transcription	Dnd41	blood
37	chr11:72063400-72070400	Strong transcription	Primary T cells from cord blood	blood
38	chr11:72063400-72071200	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr11:72063800-72069200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr11:72064000-72068800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr11:72064000-72071200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr11:72064000-72090000	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr11:72064400-72068800	Weak transcription	Fetal Lung	lung
44	chr11:72064400-72069000	Weak transcription	Brain Substantia Nigra	brain
45	chr11:72064400-72080000	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr11:72064400-72090000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr11:72064600-72070000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr11:72064600-72070200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr11:72064800-72074600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr11:72064800-72088800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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