Variant report

Variant	rs1182633
Chromosome Location	chr1:93232874-93232875
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:93225286..93227993-chr1:93232044..93233868,2	K562	blood:
2	chr1:93229641..93232894-chr1:93233646..93238232,4	K562	blood:
3	chr1:93230295..93232894-chr1:93233646..93235757,2	K562	blood:

Extended variants
information (count: 194 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:192)

rs_ID	r²[population]
rs1017008	0.89[EUR][1000 genomes]
rs10218567	0.89[EUR][1000 genomes]
rs10218670	0.89[EUR][1000 genomes]
rs10735782	0.88[EUR][1000 genomes]
rs10735783	0.92[EUR][1000 genomes]
rs10735784	0.92[EUR][1000 genomes]
rs10747445	0.88[EUR][1000 genomes]
rs10747447	0.88[EUR][1000 genomes]
rs10747448	0.88[EUR][1000 genomes]
rs10747449	0.88[EUR][1000 genomes]
rs10747450	0.88[EUR][1000 genomes]
rs10747451	0.89[EUR][1000 genomes]
rs10747452	0.82[EUR][1000 genomes]
rs10782938	0.88[EUR][1000 genomes]
rs10782940	0.88[EUR][1000 genomes]
rs10782942	0.92[EUR][1000 genomes]
rs10874715	0.88[EUR][1000 genomes]
rs10874716	0.88[EUR][1000 genomes]
rs10874721	0.88[EUR][1000 genomes]
rs10874728	0.88[EUR][1000 genomes]
rs10874729	0.88[EUR][1000 genomes]
rs10874730	0.88[EUR][1000 genomes]
rs10874731	0.88[EUR][1000 genomes]
rs11164778	0.88[EUR][1000 genomes]
rs11164790	0.87[EUR][1000 genomes]
rs11164799	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11164804	0.92[EUR][1000 genomes]
rs11164805	0.92[EUR][1000 genomes]
rs11164806	0.90[EUR][1000 genomes]
rs11164808	0.92[EUR][1000 genomes]
rs11164809	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11164812	0.90[EUR][1000 genomes]
rs11164813	0.90[EUR][1000 genomes]
rs1182632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1182636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1182639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1182640	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12029026	0.85[EUR][1000 genomes]
rs12045019	0.88[EUR][1000 genomes]
rs12046739	0.88[EUR][1000 genomes]
rs1337108	0.92[EUR][1000 genomes]
rs1337109	0.92[EUR][1000 genomes]
rs1415294	0.89[EUR][1000 genomes]
rs1415295	0.89[EUR][1000 genomes]
rs1537498	0.88[EUR][1000 genomes]
rs1538029	0.88[EUR][1000 genomes]
rs1556564	0.85[EUR][1000 genomes]
rs1556565	0.85[EUR][1000 genomes]
rs1610319	0.80[EUR][1000 genomes]
rs1932965	0.88[EUR][1000 genomes]
rs1932966	0.89[EUR][1000 genomes]
rs1932967	0.92[EUR][1000 genomes]
rs1977224	0.81[EUR][1000 genomes]
rs1999819	0.89[EUR][1000 genomes]
rs2008797	1.00[EUR][1000 genomes]
rs2025101	0.92[EUR][1000 genomes]
rs2027059	0.88[EUR][1000 genomes]
rs2027060	0.88[EUR][1000 genomes]
rs2039451	0.88[EUR][1000 genomes]
rs2039452	0.86[EUR][1000 genomes]
rs2039453	0.88[EUR][1000 genomes]
rs2050597	0.88[EUR][1000 genomes]
rs2065916	0.89[EUR][1000 genomes]
rs2065917	0.89[EUR][1000 genomes]
rs2077529	0.91[EUR][1000 genomes]
rs2095265	0.88[EUR][1000 genomes]
rs2095266	0.88[EUR][1000 genomes]
rs2095267	0.85[EUR][1000 genomes]
rs2095268	0.88[EUR][1000 genomes]
rs2097838	0.89[EUR][1000 genomes]
rs2107520	0.92[EUR][1000 genomes]
rs2107521	0.92[EUR][1000 genomes]
rs2158446	0.92[EUR][1000 genomes]
rs2180977	0.92[EUR][1000 genomes]
rs2244588	0.87[EUR][1000 genomes]
rs2298912	0.92[EUR][1000 genomes]
rs2391164	0.88[EUR][1000 genomes]
rs2391194	0.92[EUR][1000 genomes]
rs2391196	0.92[EUR][1000 genomes]
rs2391199	0.89[EUR][1000 genomes]
rs2391200	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2391201	0.89[EUR][1000 genomes]
rs2774947	0.87[EUR][1000 genomes]
rs2893217	0.88[EUR][1000 genomes]
rs35054144	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3790445	0.92[EUR][1000 genomes]
rs3790446	0.92[EUR][1000 genomes]
rs3898498	0.88[EUR][1000 genomes]
rs3898499	0.88[EUR][1000 genomes]
rs3928821	0.88[EUR][1000 genomes]
rs3936946	0.88[EUR][1000 genomes]
rs4000726	0.88[EUR][1000 genomes]
rs4000727	0.87[EUR][1000 genomes]
rs4120650	0.88[EUR][1000 genomes]
rs4264007	0.92[EUR][1000 genomes]
rs4417075	0.88[EUR][1000 genomes]
rs4525050	0.92[EUR][1000 genomes]
rs4526624	0.84[EUR][1000 genomes]
rs4638137	0.92[EUR][1000 genomes]
rs4642893	0.87[EUR][1000 genomes]
rs4847217	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4847232	0.88[EUR][1000 genomes]
rs4847234	0.88[EUR][1000 genomes]
rs4847247	0.88[EUR][1000 genomes]
rs4847266	0.89[EUR][1000 genomes]
rs4847280	0.88[EUR][1000 genomes]
rs4847285	0.92[EUR][1000 genomes]
rs4847304	0.92[EUR][1000 genomes]
rs4847305	0.88[EUR][1000 genomes]
rs4847309	0.92[EUR][1000 genomes]
rs4847310	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4847327	0.88[EUR][1000 genomes]
rs4847363	0.92[EUR][1000 genomes]
rs4847370	0.90[EUR][1000 genomes]
rs4847400	0.88[EUR][1000 genomes]
rs4847427	0.88[EUR][1000 genomes]
rs6422515	0.88[EUR][1000 genomes]
rs6603993	0.88[EUR][1000 genomes]
rs6603994	0.88[EUR][1000 genomes]
rs6603999	0.88[EUR][1000 genomes]
rs6604000	0.88[EUR][1000 genomes]
rs6604003	0.89[EUR][1000 genomes]
rs6604004	0.89[EUR][1000 genomes]
rs6604006	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6604010	0.92[EUR][1000 genomes]
rs6604012	0.92[EUR][1000 genomes]
rs6604015	0.92[EUR][1000 genomes]
rs6604018	0.92[EUR][1000 genomes]
rs6604022	0.92[EUR][1000 genomes]
rs6658232	0.97[EUR][1000 genomes]
rs6660296	0.92[EUR][1000 genomes]
rs6661600	0.92[EUR][1000 genomes]
rs6665121	0.86[EUR][1000 genomes]
rs6665579	0.92[EUR][1000 genomes]
rs6668584	0.84[EUR][1000 genomes]
rs6669914	0.91[EUR][1000 genomes]
rs6671114	0.88[EUR][1000 genomes]
rs6671421	0.89[EUR][1000 genomes]
rs6675246	0.88[EUR][1000 genomes]
rs6676454	0.92[EUR][1000 genomes]
rs6678864	0.84[EUR][1000 genomes]
rs6679839	0.89[EUR][1000 genomes]
rs6685705	0.92[EUR][1000 genomes]
rs6687803	0.88[EUR][1000 genomes]
rs6691038	0.82[EUR][1000 genomes]
rs6693371	0.90[EUR][1000 genomes]
rs6696636	0.87[EUR][1000 genomes]
rs6701130	0.88[EUR][1000 genomes]
rs6703467	0.82[EUR][1000 genomes]
rs723909	0.92[EUR][1000 genomes]
rs7416169	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7513815	0.92[EUR][1000 genomes]
rs7514716	0.88[EUR][1000 genomes]
rs7515478	0.88[EUR][1000 genomes]
rs7515866	0.85[EUR][1000 genomes]
rs7516537	0.83[EUR][1000 genomes]
rs7519694	0.85[EUR][1000 genomes]
rs7521345	0.92[EUR][1000 genomes]
rs7526582	0.90[EUR][1000 genomes]
rs7527835	0.89[EUR][1000 genomes]
rs7529332	0.88[EUR][1000 genomes]
rs7529630	0.88[EUR][1000 genomes]
rs7538520	0.88[EUR][1000 genomes]
rs7540407	0.88[EUR][1000 genomes]
rs7543327	0.92[EUR][1000 genomes]
rs7543964	0.90[EUR][1000 genomes]
rs7545318	0.88[EUR][1000 genomes]
rs7549844	0.92[EUR][1000 genomes]
rs7551340	0.82[EUR][1000 genomes]
rs7551880	0.90[EUR][1000 genomes]
rs7552085	0.92[EUR][1000 genomes]
rs7553367	0.88[EUR][1000 genomes]
rs7554183	0.87[EUR][1000 genomes]
rs7554868	0.92[EUR][1000 genomes]
rs7556243	0.88[EUR][1000 genomes]
rs757469	0.92[EUR][1000 genomes]
rs914064	0.89[EUR][1000 genomes]
rs914966	0.88[EUR][1000 genomes]
rs927339	0.89[EUR][1000 genomes]
rs932637	0.89[EUR][1000 genomes]
rs9439917	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9439920	0.92[EUR][1000 genomes]
rs9439924	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs945724	0.89[EUR][1000 genomes]
rs963043	0.88[EUR][1000 genomes]
rs963044	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9633481	0.88[EUR][1000 genomes]
rs9651256	0.88[EUR][1000 genomes]
rs9699810	0.87[EUR][1000 genomes]
rs976208	0.92[EUR][1000 genomes]
rs976209	0.92[EUR][1000 genomes]
rs980940	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv871263	chr1:93196273-93248228	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93211800-93249200	Weak transcription	Fetal Stomach	stomach
2	chr1:93214000-93240000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:93214000-93248400	Weak transcription	Lung	lung
4	chr1:93221400-93233800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:93222000-93248000	Weak transcription	HSMMtube	muscle
6	chr1:93222400-93233800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:93222400-93234000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr1:93222400-93240600	Weak transcription	Left Ventricle	heart
9	chr1:93222400-93248200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:93222400-93248200	Weak transcription	Fetal Intestine Large	intestine
11	chr1:93222400-93248400	Weak transcription	Placenta	Placenta
12	chr1:93222600-93246800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:93222800-93233800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr1:93224800-93234000	Weak transcription	Fetal Intestine Small	intestine
15	chr1:93224800-93234000	Weak transcription	Psoas Muscle	Psoas
16	chr1:93225600-93248000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr1:93226000-93249200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr1:93227800-93233800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr1:93228000-93240600	Weak transcription	Pancreas	Pancrea
20	chr1:93228200-93233800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr1:93230200-93233800	Weak transcription	NHEK	skin
22	chr1:93231600-93234000	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr1:93231600-93236600	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr1:93231600-93248000	Weak transcription	Adipose Nuclei	Adipose

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