Variant report

Variant	rs1182636
Chromosome Location	chr1:93181834-93181835
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 196 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:192)

rs_ID	r²[population]
rs1017008	0.89[EUR][1000 genomes]
rs10218567	0.89[EUR][1000 genomes]
rs10218670	0.89[EUR][1000 genomes]
rs10735782	0.88[EUR][1000 genomes]
rs10735783	0.92[EUR][1000 genomes]
rs10735784	0.92[EUR][1000 genomes]
rs10747445	0.88[EUR][1000 genomes]
rs10747447	0.88[EUR][1000 genomes]
rs10747448	0.88[EUR][1000 genomes]
rs10747449	0.88[EUR][1000 genomes]
rs10747450	0.88[EUR][1000 genomes]
rs10747451	0.89[EUR][1000 genomes]
rs10747452	0.82[EUR][1000 genomes]
rs10782938	0.88[EUR][1000 genomes]
rs10782940	0.88[EUR][1000 genomes]
rs10782942	0.92[EUR][1000 genomes]
rs10874715	0.88[EUR][1000 genomes]
rs10874716	0.88[EUR][1000 genomes]
rs10874721	0.88[EUR][1000 genomes]
rs10874728	0.88[EUR][1000 genomes]
rs10874729	0.88[EUR][1000 genomes]
rs10874730	0.88[EUR][1000 genomes]
rs10874731	0.88[EUR][1000 genomes]
rs11164778	0.88[EUR][1000 genomes]
rs11164790	0.87[EUR][1000 genomes]
rs11164799	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11164804	0.92[EUR][1000 genomes]
rs11164805	0.92[EUR][1000 genomes]
rs11164806	0.90[EUR][1000 genomes]
rs11164808	0.92[EUR][1000 genomes]
rs11164809	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11164812	0.90[EUR][1000 genomes]
rs11164813	0.90[EUR][1000 genomes]
rs1182632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1182633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1182639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1182640	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12029026	0.85[EUR][1000 genomes]
rs12045019	0.88[EUR][1000 genomes]
rs12046739	0.88[EUR][1000 genomes]
rs1337108	0.92[EUR][1000 genomes]
rs1337109	0.92[EUR][1000 genomes]
rs1415294	0.89[EUR][1000 genomes]
rs1415295	0.89[EUR][1000 genomes]
rs1537498	0.88[EUR][1000 genomes]
rs1538029	0.88[EUR][1000 genomes]
rs1556564	0.85[EUR][1000 genomes]
rs1556565	0.85[EUR][1000 genomes]
rs1610319	0.80[EUR][1000 genomes]
rs1932965	0.88[EUR][1000 genomes]
rs1932966	0.89[EUR][1000 genomes]
rs1932967	0.92[EUR][1000 genomes]
rs1977224	0.81[EUR][1000 genomes]
rs1999819	0.89[EUR][1000 genomes]
rs2008797	1.00[EUR][1000 genomes]
rs2025101	0.92[EUR][1000 genomes]
rs2027059	0.88[EUR][1000 genomes]
rs2027060	0.88[EUR][1000 genomes]
rs2039451	0.88[EUR][1000 genomes]
rs2039452	0.86[EUR][1000 genomes]
rs2039453	0.88[EUR][1000 genomes]
rs2050597	0.88[EUR][1000 genomes]
rs2065916	0.89[EUR][1000 genomes]
rs2065917	0.89[EUR][1000 genomes]
rs2077529	0.91[EUR][1000 genomes]
rs2095265	0.88[EUR][1000 genomes]
rs2095266	0.88[EUR][1000 genomes]
rs2095267	0.85[EUR][1000 genomes]
rs2095268	0.88[EUR][1000 genomes]
rs2097838	0.89[EUR][1000 genomes]
rs2107520	0.92[EUR][1000 genomes]
rs2107521	0.92[EUR][1000 genomes]
rs2158446	0.92[EUR][1000 genomes]
rs2180977	0.92[EUR][1000 genomes]
rs2244588	0.87[EUR][1000 genomes]
rs2298912	0.92[EUR][1000 genomes]
rs2391164	0.88[EUR][1000 genomes]
rs2391194	0.92[EUR][1000 genomes]
rs2391196	0.92[EUR][1000 genomes]
rs2391199	0.89[EUR][1000 genomes]
rs2391200	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2391201	0.89[EUR][1000 genomes]
rs2774947	0.87[EUR][1000 genomes]
rs2893217	0.88[EUR][1000 genomes]
rs35054144	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3790445	0.92[EUR][1000 genomes]
rs3790446	0.92[EUR][1000 genomes]
rs3898498	0.88[EUR][1000 genomes]
rs3898499	0.88[EUR][1000 genomes]
rs3928821	0.88[EUR][1000 genomes]
rs3936946	0.88[EUR][1000 genomes]
rs4000726	0.88[EUR][1000 genomes]
rs4000727	0.87[EUR][1000 genomes]
rs4120650	0.88[EUR][1000 genomes]
rs4264007	0.92[EUR][1000 genomes]
rs4417075	0.88[EUR][1000 genomes]
rs4525050	0.92[EUR][1000 genomes]
rs4526624	0.84[EUR][1000 genomes]
rs4638137	0.92[EUR][1000 genomes]
rs4642893	0.87[EUR][1000 genomes]
rs4847217	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4847232	0.88[EUR][1000 genomes]
rs4847234	0.88[EUR][1000 genomes]
rs4847247	0.88[EUR][1000 genomes]
rs4847266	0.89[EUR][1000 genomes]
rs4847280	0.88[EUR][1000 genomes]
rs4847285	0.92[EUR][1000 genomes]
rs4847304	0.92[EUR][1000 genomes]
rs4847305	0.88[EUR][1000 genomes]
rs4847309	0.92[EUR][1000 genomes]
rs4847310	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4847327	0.88[EUR][1000 genomes]
rs4847363	0.92[EUR][1000 genomes]
rs4847370	0.90[EUR][1000 genomes]
rs4847400	0.88[EUR][1000 genomes]
rs4847427	0.88[EUR][1000 genomes]
rs6422515	0.88[EUR][1000 genomes]
rs6603993	0.88[EUR][1000 genomes]
rs6603994	0.88[EUR][1000 genomes]
rs6603999	0.88[EUR][1000 genomes]
rs6604000	0.88[EUR][1000 genomes]
rs6604003	0.89[EUR][1000 genomes]
rs6604004	0.89[EUR][1000 genomes]
rs6604006	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6604010	0.92[EUR][1000 genomes]
rs6604012	0.92[EUR][1000 genomes]
rs6604015	0.92[EUR][1000 genomes]
rs6604018	0.92[EUR][1000 genomes]
rs6604022	0.92[EUR][1000 genomes]
rs6658232	0.97[EUR][1000 genomes]
rs6660296	0.92[EUR][1000 genomes]
rs6661600	0.92[EUR][1000 genomes]
rs6665121	0.86[EUR][1000 genomes]
rs6665579	0.92[EUR][1000 genomes]
rs6668584	0.84[EUR][1000 genomes]
rs6669914	0.91[EUR][1000 genomes]
rs6671114	0.88[EUR][1000 genomes]
rs6671421	0.89[EUR][1000 genomes]
rs6675246	0.88[EUR][1000 genomes]
rs6676454	0.92[EUR][1000 genomes]
rs6678864	0.84[EUR][1000 genomes]
rs6679839	0.89[EUR][1000 genomes]
rs6685705	0.92[EUR][1000 genomes]
rs6687803	0.88[EUR][1000 genomes]
rs6691038	0.82[EUR][1000 genomes]
rs6693371	0.90[EUR][1000 genomes]
rs6696636	0.87[EUR][1000 genomes]
rs6701130	0.88[EUR][1000 genomes]
rs6703467	0.82[EUR][1000 genomes]
rs723909	0.92[EUR][1000 genomes]
rs7416169	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7513815	0.92[EUR][1000 genomes]
rs7514716	0.88[EUR][1000 genomes]
rs7515478	0.88[EUR][1000 genomes]
rs7515866	0.85[EUR][1000 genomes]
rs7516537	0.83[EUR][1000 genomes]
rs7519694	0.85[EUR][1000 genomes]
rs7521345	0.92[EUR][1000 genomes]
rs7526582	0.90[EUR][1000 genomes]
rs7527835	0.89[EUR][1000 genomes]
rs7529332	0.88[EUR][1000 genomes]
rs7529630	0.88[EUR][1000 genomes]
rs7538520	0.88[EUR][1000 genomes]
rs7540407	0.88[EUR][1000 genomes]
rs7543327	0.92[EUR][1000 genomes]
rs7543964	0.90[EUR][1000 genomes]
rs7545318	0.88[EUR][1000 genomes]
rs7549844	0.92[EUR][1000 genomes]
rs7551340	0.82[EUR][1000 genomes]
rs7551880	0.90[EUR][1000 genomes]
rs7552085	0.92[EUR][1000 genomes]
rs7553367	0.88[EUR][1000 genomes]
rs7554183	0.87[EUR][1000 genomes]
rs7554868	0.92[EUR][1000 genomes]
rs7556243	0.88[EUR][1000 genomes]
rs757469	0.92[EUR][1000 genomes]
rs914064	0.89[EUR][1000 genomes]
rs914966	0.88[EUR][1000 genomes]
rs927339	0.89[EUR][1000 genomes]
rs932637	0.89[EUR][1000 genomes]
rs9439917	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9439920	0.92[EUR][1000 genomes]
rs9439924	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs945724	0.89[EUR][1000 genomes]
rs963043	0.88[EUR][1000 genomes]
rs963044	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9633481	0.88[EUR][1000 genomes]
rs9651256	0.88[EUR][1000 genomes]
rs9699810	0.87[EUR][1000 genomes]
rs976208	0.92[EUR][1000 genomes]
rs976209	0.92[EUR][1000 genomes]
rs980940	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1794348	chr1:93090476-93192932	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1802611	chr1:93090476-93219907	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv997898	chr1:93167128-93228156	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93098400-93205400	Weak transcription	NHLF	lung
2	chr1:93123600-93213400	Weak transcription	Gastric	stomach
3	chr1:93155800-93213400	Weak transcription	Lung	lung
4	chr1:93161000-93197400	Weak transcription	Primary B cells from cord blood	blood
5	chr1:93161000-93197800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr1:93161000-93199000	Weak transcription	Left Ventricle	heart
7	chr1:93163800-93190000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:93170200-93189800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr1:93174400-93202000	Weak transcription	Fetal Heart	heart
10	chr1:93175800-93190200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:93175800-93199400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:93176000-93183200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr1:93177800-93197600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr1:93181800-93196600	Weak transcription	HepG2	liver

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