Variant report

Variant	rs11827039
Chromosome Location	chr11:17389427-17389428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:17386801..17391541-chr11:17392806..17398479,7	K562	blood:
2	chr11:17379653..17382608-chr11:17386484..17389844,3	K562	blood:
3	chr11:17373389..17376552-chr11:17389035..17393180,4	K562	blood:
4	chr11:17387455..17389488-chr11:17394125..17397016,2	K562	blood:

Variant related genes	Relation type
ENSG00000188211	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11828705	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12292288	1.00[ASN][1000 genomes]
rs12293803	1.00[ASN][1000 genomes]
rs12422139	1.00[ASN][1000 genomes]
rs17846719	1.00[ASN][1000 genomes]
rs17846760	1.00[ASN][1000 genomes]
rs17846764	1.00[ASN][1000 genomes]
rs17846770	1.00[ASN][1000 genomes]
rs2214285	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55898520	1.00[ASN][1000 genomes]
rs56003324	1.00[ASN][1000 genomes]
rs56261601	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56731620	1.00[ASN][1000 genomes]
rs6486364	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6486365	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865007	1.00[ASN][1000 genomes]
rs72865016	1.00[ASN][1000 genomes]
rs72865031	1.00[ASN][1000 genomes]
rs72865036	1.00[ASN][1000 genomes]
rs72865050	1.00[ASN][1000 genomes]
rs72865058	1.00[ASN][1000 genomes]
rs72866820	1.00[ASN][1000 genomes]
rs757111	1.00[ASN][1000 genomes]
rs7927686	1.00[ASN][1000 genomes]
rs7937774	1.00[ASN][1000 genomes]
rs8192691	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17375400-17389600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:17375400-17390200	Weak transcription	Small Intestine	intestine
3	chr11:17376000-17389800	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr11:17376000-17389800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr11:17376000-17390000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr11:17376000-17391000	Weak transcription	Right Ventricle	heart
7	chr11:17376200-17390000	Weak transcription	Fetal Brain Male	brain
8	chr11:17376400-17390000	Weak transcription	HUVEC	blood vessel
9	chr11:17376400-17390600	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr11:17376600-17391400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:17380200-17390200	Weak transcription	Osteobl	bone
12	chr11:17382400-17401200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:17385200-17389600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:17385400-17389600	Strong transcription	K562	blood
15	chr11:17385600-17390000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:17386200-17389800	Weak transcription	Brain Germinal Matrix	brain
17	chr11:17386200-17390000	Weak transcription	Brain Substantia Nigra	brain
18	chr11:17386800-17390000	Strong transcription	Duodenum Mucosa	Duodenum
19	chr11:17386800-17390000	Strong transcription	Rectal Mucosa Donor 31	rectum
20	chr11:17386800-17390400	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr11:17387000-17390600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr11:17387200-17389800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr11:17387200-17389800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:17387200-17390400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:17387200-17398600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr11:17387400-17390000	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr11:17387400-17391000	Strong transcription	Primary T cells from cord blood	blood
28	chr11:17387600-17389800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr11:17387600-17389800	Strong transcription	Aorta	Aorta
30	chr11:17387600-17390600	Enhancers	Placenta	Placenta
31	chr11:17387600-17393200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr11:17387800-17391200	Strong transcription	Pancreatic Islets	Pancreatic Islet
33	chr11:17388000-17389600	Strong transcription	Colonic Mucosa	Colon
34	chr11:17388000-17389800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr11:17388000-17390400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr11:17388000-17390600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr11:17388000-17391200	Strong transcription	Brain Inferior Temporal Lobe	brain
38	chr11:17388200-17391600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr11:17388200-17395200	ZNF genes & repeats	Thymus	Thymus
40	chr11:17388200-17395800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr11:17388200-17396800	ZNF genes & repeats	Fetal Intestine Small	intestine
42	chr11:17388400-17389600	Strong transcription	Fetal Brain Female	brain
43	chr11:17388400-17389800	Strong transcription	Rectal Smooth Muscle	rectum
44	chr11:17388400-17390000	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr11:17388400-17390400	Strong transcription	Stomach Smooth Muscle	stomach
46	chr11:17388400-17391600	Strong transcription	Gastric	stomach
47	chr11:17388400-17391800	Weak transcription	Brain Hippocampus Middle	brain
48	chr11:17388600-17389600	Weak transcription	HSMMtube	muscle
49	chr11:17388600-17390000	Strong transcription	Left Ventricle	heart
50	chr11:17388600-17390000	Enhancers	HMEC	breast

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