Variant report

Variant	rs11827686
Chromosome Location	chr11:76326026-76326027
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10793176	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10899237	0.82[EUR][1000 genomes]
rs10899238	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11236798	0.82[EUR][1000 genomes]
rs11236806	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11236808	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11236809	0.94[ASN][1000 genomes]
rs11605443	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12222706	0.84[ASN][1000 genomes]
rs12363012	0.91[AFR][1000 genomes]
rs4485135	0.82[EUR][1000 genomes]
rs4553390	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58107908	0.89[AFR][1000 genomes]
rs7943599	0.82[EUR][1000 genomes]
rs7950468	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7951284	0.82[EUR][1000 genomes]
rs7951308	0.85[AFR][1000 genomes]
rs9645696	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043912	chr11:76301316-76439095	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1039451	chr11:76301316-76440221	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv1810781	chr11:76311021-76464814	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76314600-76327000	Weak transcription	Gastric	stomach
2	chr11:76316400-76326600	Weak transcription	Stomach Mucosa	stomach
3	chr11:76317000-76327200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:76321200-76326600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:76321400-76326800	Weak transcription	NH-A	brain
6	chr11:76322000-76326200	Weak transcription	Esophagus	oesophagus
7	chr11:76322200-76326400	Weak transcription	Brain Germinal Matrix	brain
8	chr11:76322400-76326400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:76322400-76326600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr11:76322600-76326200	Weak transcription	Ovary	ovary
11	chr11:76322600-76327200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr11:76322800-76326800	Weak transcription	Colon Smooth Muscle	Colon
13	chr11:76323200-76326200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:76324400-76326200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:76324800-76329800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:76325000-76326200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:76325000-76327400	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr11:76325000-76327600	Enhancers	Lung	lung
19	chr11:76325000-76328600	Enhancers	Left Ventricle	heart
20	chr11:76325000-76328600	Enhancers	Right Atrium	heart
21	chr11:76325000-76328600	Enhancers	Right Ventricle	heart
22	chr11:76325000-76329000	Enhancers	Fetal Muscle Trunk	muscle
23	chr11:76325000-76329200	Enhancers	Fetal Muscle Leg	muscle
24	chr11:76325000-76329600	Enhancers	NHDF-Ad	bronchial
25	chr11:76325200-76326200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:76325200-76326200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:76325200-76327600	Enhancers	HUVEC	blood vessel
28	chr11:76325200-76328600	Enhancers	Adipose Nuclei	Adipose
29	chr11:76325200-76328600	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr11:76325200-76329400	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr11:76325200-76329600	Enhancers	Osteobl	bone
32	chr11:76325200-76329800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr11:76325400-76326200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:76325400-76326400	Enhancers	Brain Substantia Nigra	brain
35	chr11:76325400-76326800	Enhancers	Aorta	Aorta
36	chr11:76325400-76327200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr11:76325400-76328400	Enhancers	Fetal Heart	heart
38	chr11:76325400-76328400	Enhancers	Spleen	Spleen
39	chr11:76325400-76329200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr11:76325600-76326600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr11:76325600-76326800	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr11:76325600-76327400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr11:76325600-76329200	Enhancers	Fetal Stomach	stomach
44	chr11:76325800-76327200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:76325800-76327200	Enhancers	Brain Hippocampus Middle	brain
46	chr11:76325800-76328200	Enhancers	Placenta	Placenta
47	chr11:76326000-76327000	Enhancers	Fetal Lung	lung
48	chr11:76326000-76328200	Enhancers	Colonic Mucosa	Colon

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