Variant report

Variant	rs11828128
Chromosome Location	chr11:72122198-72122199
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11235499	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11821309	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11824758	0.82[AFR][1000 genomes]
rs11825565	1.00[MEX][hapmap]
rs11826227	0.84[ASW][hapmap];0.90[GIH][hapmap];0.86[LWK][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs11828745	1.00[MEX][hapmap]
rs12295464	0.92[ASN][1000 genomes]
rs17162146	0.84[ASW][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs17162150	0.90[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1864322	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3741162	0.84[ASW][hapmap];1.00[YRI][hapmap]
rs57380316	0.85[ASN][1000 genomes]
rs57402767	0.93[ASN][1000 genomes]
rs7107422	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7118089	0.93[ASN][1000 genomes]
rs7118697	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.88[YRI][hapmap];0.93[ASN][1000 genomes]
rs7120137	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7129526	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7947482	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832206	chr11:72006573-72176017	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72090400-72123000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:72099200-72122800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:72099600-72125000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:72099600-72125000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr11:72105000-72122200	Weak transcription	GM12878-XiMat	blood
6	chr11:72105400-72124800	Weak transcription	A549	lung
7	chr11:72106800-72136800	Weak transcription	Esophagus	oesophagus
8	chr11:72106800-72136800	Weak transcription	NHLF	lung
9	chr11:72107200-72122400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr11:72107400-72122600	Weak transcription	Brain Germinal Matrix	brain
11	chr11:72107600-72122600	Weak transcription	Colon Smooth Muscle	Colon
12	chr11:72107600-72122800	Weak transcription	Fetal Brain Female	brain
13	chr11:72107600-72122800	Weak transcription	Right Ventricle	heart
14	chr11:72107600-72125000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr11:72107800-72125000	Weak transcription	Fetal Heart	heart
16	chr11:72108000-72122600	Weak transcription	Fetal Lung	lung
17	chr11:72108600-72123600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr11:72109600-72137000	Weak transcription	Osteobl	bone
19	chr11:72109800-72139200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr11:72110000-72134600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr11:72110600-72139000	Weak transcription	Colonic Mucosa	Colon
22	chr11:72111800-72138400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr11:72112000-72122200	Weak transcription	Fetal Intestine Large	intestine
24	chr11:72112000-72124800	Weak transcription	HSMMtube	muscle
25	chr11:72113000-72125000	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr11:72113000-72125000	Weak transcription	HSMM	muscle
27	chr11:72113200-72124800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr11:72113400-72122800	Weak transcription	Lung	lung
29	chr11:72113600-72122200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr11:72114000-72122200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr11:72114000-72122600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr11:72114000-72122600	Weak transcription	Fetal Stomach	stomach
33	chr11:72114000-72122600	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr11:72114000-72122800	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr11:72114000-72122800	Weak transcription	Fetal Muscle Trunk	muscle
36	chr11:72114000-72123000	Weak transcription	Spleen	Spleen
37	chr11:72114000-72125000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr11:72114000-72125000	Weak transcription	Psoas Muscle	Psoas
39	chr11:72114000-72130000	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr11:72114000-72132000	Weak transcription	Dnd41	blood
41	chr11:72114000-72138000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr11:72114200-72122800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr11:72114200-72122800	Weak transcription	Stomach Smooth Muscle	stomach
44	chr11:72114200-72124800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr11:72114200-72125000	Weak transcription	Left Ventricle	heart
46	chr11:72114200-72138600	Weak transcription	Ovary	ovary
47	chr11:72114400-72125000	Weak transcription	Primary T cells from cord blood	blood
48	chr11:72114600-72122200	Weak transcription	Fetal Muscle Leg	muscle
49	chr11:72114600-72125000	Weak transcription	Hela-S3	cervix
50	chr11:72115200-72136600	Weak transcription	Aorta	Aorta

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