Variant report

Variant	rs11832892
Chromosome Location	chr12:63161005-63161006
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:62995380..62997043-chr12:63160693..63163072,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257354	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11832267	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11835042	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12303266	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12305407	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12318793	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55683940	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57458527	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67454431	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs68180179	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7297013	0.85[EUR][1000 genomes]
rs7297041	0.89[EUR][1000 genomes]
rs7297161	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7298908	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7299622	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7302870	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7302967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7303135	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7311502	0.88[EUR][1000 genomes]
rs73314563	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73314565	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73314585	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559157	chr12:63142592-63163019	Enhancers Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv899160	chr12:63149213-63209623	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11832892	DTX3	cis	parietal	SCAN

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63140000-63168600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr12:63145800-63163400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr12:63145800-63169400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr12:63150000-63179800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr12:63152400-63161200	Weak transcription	HUVEC	blood vessel
6	chr12:63153600-63163600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr12:63153600-63164000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr12:63153600-63171000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr12:63153800-63163200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr12:63154000-63163000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr12:63155400-63161200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr12:63156000-63168000	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr12:63156200-63161600	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr12:63156400-63163200	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr12:63157400-63165400	Weak transcription	Pancreas	Pancrea
16	chr12:63157600-63163200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr12:63157800-63163200	Strong transcription	HepG2	liver
18	chr12:63157800-63163600	Weak transcription	Right Atrium	heart
19	chr12:63158000-63163600	Weak transcription	Ovary	ovary
20	chr12:63158000-63166000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr12:63158200-63163600	Weak transcription	Duodenum Mucosa	Duodenum
22	chr12:63158200-63164000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr12:63158200-63167600	Weak transcription	Fetal Intestine Large	intestine
24	chr12:63158400-63162200	Strong transcription	Fetal Intestine Small	intestine
25	chr12:63158600-63166800	Weak transcription	Left Ventricle	heart
26	chr12:63158800-63161200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr12:63159000-63164400	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr12:63160000-63161800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr12:63160000-63162200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr12:63160000-63163600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr12:63160200-63161800	Enhancers	Fetal Muscle Leg	muscle
32	chr12:63160200-63162000	Enhancers	HSMM	muscle
33	chr12:63160200-63166600	Enhancers	A549	lung
34	chr12:63160400-63161600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr12:63160400-63162000	Enhancers	Fetal Thymus	thymus
36	chr12:63160400-63162000	Enhancers	NHDF-Ad	bronchial
37	chr12:63160400-63166600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr12:63160600-63161800	Enhancers	Brain Angular Gyrus	brain
39	chr12:63160600-63161800	Enhancers	Brain Hippocampus Middle	brain
40	chr12:63160600-63162000	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr12:63160600-63162000	Enhancers	HSMMtube	muscle
42	chr12:63160600-63162200	Enhancers	Brain Cingulate Gyrus	brain
43	chr12:63160800-63161200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr12:63160800-63161200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr12:63160800-63161200	Enhancers	Fetal Muscle Trunk	muscle
46	chr12:63160800-63161400	Strong transcription	Aorta	Aorta
47	chr12:63160800-63161800	Enhancers	Muscle Satellite Cultured Cells	--
48	chr12:63160800-63161800	Enhancers	Adipose Nuclei	Adipose
49	chr12:63160800-63162200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr12:63160800-63162200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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