Variant report

Variant	rs11833870
Chromosome Location	chr10:118241642-118241643
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1075239	0.86[ASN][1000 genomes]
rs10772491	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10772492	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10845389	0.92[EUR][1000 genomes]
rs10845390	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10845391	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10845394	0.87[EUR][1000 genomes]
rs10845396	0.86[EUR][1000 genomes]
rs10845397	0.85[EUR][1000 genomes]
rs11054377	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11054378	0.91[EUR][1000 genomes]
rs11054379	0.91[EUR][1000 genomes]
rs11054384	0.91[EUR][1000 genomes]
rs11054385	0.91[EUR][1000 genomes]
rs11054389	0.87[EUR][1000 genomes]
rs11054390	0.86[EUR][1000 genomes]
rs1116686	0.86[ASN][1000 genomes]
rs11835584	0.91[EUR][1000 genomes]
rs12099745	0.87[ASN][1000 genomes]
rs12366449	0.90[EUR][1000 genomes]
rs12368746	0.91[EUR][1000 genomes]
rs12371924	0.91[EUR][1000 genomes]
rs4763712	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58419583	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58572989	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59053741	0.85[ASN][1000 genomes]
rs60345208	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6488434	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6488436	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6488437	0.89[EUR][1000 genomes]
rs6488440	0.91[EUR][1000 genomes]
rs7132693	0.91[EUR][1000 genomes]
rs7133901	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7311752	0.85[EUR][1000 genomes]
rs7313110	0.85[EUR][1000 genomes]
rs73286648	0.86[ASN][1000 genomes]
rs7957684	0.87[ASN][1000 genomes]
rs7957687	0.86[ASN][1000 genomes]
rs7962768	0.91[EUR][1000 genomes]
rs9668837	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9669330	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832001	chr10:118138370-118315059	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118238200-118241800	Weak transcription	NHEK	skin
2	chr10:118238600-118249400	Weak transcription	HMEC	breast
3	chr10:118239400-118245800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:118240600-118245200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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