Variant report

Variant	rs1183883
Chromosome Location	chr14:38799796-38799797
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1168419	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1168420	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1168421	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1168422	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1168423	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1168424	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1168425	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1168426	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1168427	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1168428	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1168430	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1168435	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1168460	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1168462	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1168463	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1168466	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1168477	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1168490	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1168495	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1168497	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1168498	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1168500	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1168503	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1177558	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1182911	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1182912	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1183880	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1183882	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1184553	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1754703	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17600440	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1763176	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1763177	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2812053	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs928105	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs969305	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs990495	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916985	chr14:38052347-38838551	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv533235	chr14:38558180-39117391	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv530640	chr14:38702117-38927901	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2757560	chr14:38788605-38804433	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2759979	chr14:38788605-38804433	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv564400	chr14:38792363-38803496	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1054423	chr14:38794426-38812390	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv9135	chr14:38798470-38803877	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
9	esv2761610	chr14:38799454-38800374	Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
10	esv3530583	chr14:38799515-38803754	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a
11	esv3530584	chr14:38799515-38803754	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:38798600-38800000	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr14:38798800-38800000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:38799000-38800000	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr14:38799200-38799800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr14:38799600-38800000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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