Variant report

Variant	rs11841196
Chromosome Location	chr13:51218747-51218748
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1323887	1.00[CHB][hapmap]
rs17074706	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1935173	1.00[ASN][1000 genomes]
rs2476619	1.00[CHB][hapmap]
rs2476624	1.00[CHB][hapmap]
rs2497094	1.00[CHB][hapmap]
rs7322489	1.00[ASN][1000 genomes]
rs7982435	0.87[AMR][1000 genomes]
rs7988814	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7996529	1.00[CHB][hapmap]
rs9596326	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
2	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753864	chr13:51136699-51375199	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51210800-51223800	Weak transcription	Fetal Thymus	thymus
2	chr13:51218200-51218800	Enhancers	HepG2	liver
3	chr13:51218200-51220000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr13:51218200-51220400	Enhancers	HMEC	breast
5	chr13:51218400-51219200	Enhancers	HSMMtube	muscle
6	chr13:51218400-51220400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr13:51218400-51220600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr13:51218400-51220600	Enhancers	NHEK	skin
9	chr13:51218600-51219000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr13:51218600-51219000	Enhancers	Pancreas	Pancrea
11	chr13:51218600-51219200	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr13:51218600-51220600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr13:51218600-51220600	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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