Variant report

Variant	rs11842755
Chromosome Location	chr13:96782595-96782596
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1015068	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11070157	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1114308	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11619490	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11843772	0.83[EUR][1000 genomes]
rs1540609	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17189951	0.81[EUR][1000 genomes]
rs1813179	0.81[EUR][1000 genomes]
rs1854173	0.83[EUR][1000 genomes]
rs1872161	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2026819	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2062276	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2129005	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2170812	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2389571	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28649586	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34816227	0.83[EUR][1000 genomes]
rs35898412	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3759441	0.82[EUR][1000 genomes]
rs3759442	0.81[EUR][1000 genomes]
rs3782989	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3825424	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4771923	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4773933	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4773934	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4773935	0.82[EUR][1000 genomes]
rs7317285	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7331461	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7332683	0.80[AMR][1000 genomes]
rs7334100	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7338224	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs764714	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7987510	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7992875	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7995922	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7998353	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9516642	0.80[AMR][1000 genomes]
rs9556518	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9556520	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9556523	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9562012	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9562015	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9562016	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9562017	0.82[EUR][1000 genomes]
rs9562018	0.84[EUR][1000 genomes]
rs9562019	0.83[EUR][1000 genomes]
rs9562025	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9562027	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9562032	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9634487	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050430	chr13:96508530-97020734	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv541883	chr13:96508530-97020734	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1041165	chr13:96522021-96966520	Enhancers Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1040320	chr13:96573646-96790859	Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv869471	chr13:96622327-97223956	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
6	nsv530390	chr13:96681439-97193029	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
7	nsv900936	chr13:96697209-97032483	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11842755	DNAJC3	cis	Nerve Tibial	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96782400-96783200	Enhancers	HUES48 Cell Line	embryonic stem cell

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